PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
9951-10000 / 86044 show all
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.8405
84.9119
86.7896
57.5804
17843171695258252
97.6744
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
48.6351
57.2200
42.2902
47.0270
4243177461018780
76.6208
ciseli-customINDELD1_5map_l125_m2_e0*
76.8250
72.2660
81.9980
90.9083
82631782918282
45.0549
ciseli-customINDELI1_5map_l100_m2_e0homalt
54.2174
40.3013
82.8125
83.8994
2143172124435
79.5455
ciseli-customINDEL*map_l150_m1_e0het
66.7585
62.9240
71.0907
93.2928
538317541220129
58.6364
ckim-gatkINDELI1_5HG002complexvar*
99.4404
99.0498
99.8341
56.8511
33046317330925541
74.5455
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.8873
84.9119
86.8852
57.3613
17843171696256250
97.6562
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.4644
86.6019
99.1783
36.1223
204931720521717
100.0000
ghariani-varprowlSNPtimap_l150_m1_e0*
97.8236
98.3918
97.2619
78.7439
1939531719395546133
24.3590
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
50.5691
51.7504
49.4405
81.2333
3403174864976
1.2072
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200het
34.5477
35.3061
33.8212
42.2578
17331764712661039
82.0695
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
3.3537
0.0000
0.0000
11317000
raldana-dualsentieonSNPtimap_l100_m2_e0*
99.3403
99.3525
99.3281
64.7470
486443174863732919
5.7751
raldana-dualsentieonSNPtimap_l100_m2_e1*
99.3433
99.3594
99.3272
64.7652
491683174916133319
5.7057
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.3823
95.3945
99.4547
79.4362
65663176566369
25.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.2495
86.6245
98.6558
36.0651
205331720552821
75.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
90.4376
83.7686
98.2603
35.1614
163631716382915
51.7241
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.9526
84.9119
87.0190
57.3989
17843171696253247
97.6285
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7354
96.2302
99.2883
62.1142
809231780925849
84.4828
egarrison-hhgaSNP*map_l100_m0_e0het
99.1151
98.5051
99.7326
69.3594
20888317208895624
42.8571
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
83.8622
76.0787
93.4198
53.8889
100531610087148
67.6056
ciseli-customINDELD1_5map_l100_m2_e0het
79.5047
74.8408
84.7885
89.8548
94031694216939
23.0769
ckim-dragenINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3919
95.3611
99.5111
32.7822
649631665133232
100.0000
hfeng-pmm2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0510
98.2298
99.8861
53.8211
1753531617534201
5.0000
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
37.7753
27.5229
60.2000
50.3476
120316301199199
100.0000
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
31.4024
23.6715
46.6321
77.0784
983169010393
90.2913
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
63.7102
48.2815
93.6306
83.3598
2953162942010
50.0000
gduggal-bwaplatINDELD1_5map_l100_m1_e0het
84.4444
73.8627
98.5651
92.5841
893316893134
30.7692
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.0365
96.2201
95.8537
59.0186
80443168045348182
52.2989
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.0365
96.2201
95.8537
59.0186
80443168045348182
52.2989
anovak-vgINDELI16_PLUSHG002complexvarhetalt
0.0000
5.6716
0.0000
0.0000
19316000
anovak-vgSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.1744
93.3669
91.0119
70.2375
44483164506445188
42.2472
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.7688
92.5437
87.1556
81.5735
39223164207620247
39.8387
bgallagher-sentieonSNP*map_l100_m1_e0*
99.4317
99.5636
99.3001
65.4224
720873167207650881
15.9449
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
74.7604
0.0000
0.0000
936316000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.6420
98.4090
98.8761
66.2789
195463162023523048
20.8696
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
50.2642
88.4376
35.1094
44.6429
2417316243845064477
99.3564
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
22.8155
12.9477
95.9184
63.1579
473164722
100.0000
ghariani-varprowlSNPti*homalt
99.8530
99.9608
99.7455
17.9110
80272031580276920481014
49.5117
hfeng-pmm1SNP*map_l125_m2_e1het
99.2688
98.9372
99.6025
71.5784
293253152931911729
24.7863
hfeng-pmm1SNPtimap_l100_m2_e0*
99.5722
99.3566
99.7887
64.0145
486463154863910332
31.0680
hfeng-pmm1SNPtimap_l100_m2_e1*
99.5757
99.3634
99.7889
64.0077
491703154916310432
30.7692
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
73.5605
66.5605
82.2059
36.1952
6273152236484477
98.5537
gduggal-bwafbINDELD1_5*homalt
98.9426
99.3562
98.5324
61.7935
4861131548609724697
96.2707
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
68.8414
56.2500
88.6957
94.3586
405315408529
17.3077
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.3165
0.0000
0.0000
1315000
ltrigg-rtg1SNP*map_l250_m1_e0het
96.4484
93.3754
99.7305
78.8925
44403154440124
33.3333
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.6332
95.3758
100.0000
31.9545
6497315651400
rpoplin-dv42INDELI1_5HG002complexvar*
99.3509
99.0558
99.6477
56.5141
3304831533091117105
89.7436
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
84.6939
74.8403
97.5355
31.8035
93731510292623
88.4615