PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
9851-9900 / 86044 show all
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
97.4799
95.1964
99.8756
26.6788
6421324642387
87.5000
gduggal-bwavardINDELD1_5HG002complexvarhet
94.9162
98.4397
91.6362
58.2975
204413241954617841236
69.2825
jli-customSNPtimap_l100_m1_e0*
99.4974
99.3240
99.6713
60.4603
476073244760515750
31.8471
jli-customSNPtimap_sirenhet
99.5420
99.4806
99.6035
52.5864
620583246205424750
20.2429
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
98.1282
96.9069
99.3807
45.7062
10151324104306564
98.4615
ltrigg-rtg1SNP*map_l250_m2_e1het
96.6928
93.8640
99.6973
80.4597
49413234941154
26.6667
jpowers-varprowlSNP*map_sirenhomalt
99.5443
99.4144
99.6746
55.8957
5483332354834179129
72.0670
hfeng-pmm2SNP*map_l100_m2_e0*
99.5209
99.5633
99.4785
67.6209
736413237363038647
12.1762
hfeng-pmm2SNP*map_l100_m2_e1*
99.5245
99.5678
99.4812
67.6245
744143237440338847
12.1134
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.9104
91.7791
94.0700
54.4828
36063233601227215
94.7137
gduggal-bwavardINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
78.1643
64.5833
98.9779
55.8315
58932358165
83.3333
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
77.3379
64.9675
95.5272
85.0988
599323598288
28.5714
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.5449
91.7497
99.6677
68.0131
35923233599129
75.0000
rpoplin-dv42INDELD16_PLUSHG002compoundhethetalt
90.6567
83.2469
99.5146
24.3343
1605323164088
100.0000
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
91.2102
88.3164
94.3001
47.2057
24343222432147146
99.3197
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3292
95.2834
99.4647
22.7525
650532265043534
97.1429
jpowers-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.9095
98.1671
97.6533
71.1033
172463221731141617
4.0865
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
84.9703
74.2812
99.2529
37.7409
93032293077
100.0000
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0384
94.9067
99.2681
58.6918
600032259684425
56.8182
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0384
94.9067
99.2681
58.6918
600032259684425
56.8182
ltrigg-rtg2SNPtimap_l150_m0_e0*
97.8455
95.9038
99.8675
65.1893
75393227538104
40.0000
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
95.1353
97.1012
93.2475
55.2934
1078632211006797695
87.2020
qzeng-customSNPtiHG002compoundhet*
98.4045
98.1577
98.6526
40.8633
171563221771924286
35.5372
raldana-dualsentieonINDEL*HG002complexvarhetalt
95.3862
91.2949
99.8613
67.7087
3377322360055
100.0000
ckim-dragenINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.0329
91.8045
94.2947
54.2066
36073223603218214
98.1651
ckim-isaacINDEL*map_l125_m2_e1homalt
73.5557
58.3979
99.3407
81.3295
45232245231
33.3333
ckim-isaacINDELD1_5HG002complexvarhetalt
83.2980
76.1834
91.8782
58.9369
10303221448128116
90.6250
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.7392
94.5387
99.0446
39.1669
557432255985450
92.5926
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.7392
94.5387
99.0446
39.1669
557432255985450
92.5926
gduggal-bwaplatINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
85.3755
75.1159
98.8810
48.3447
9723229721110
90.9091
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
69.8324
53.8020
99.4695
52.3990
37532237522
100.0000
gduggal-bwaplatINDELD1_5map_l100_m2_e1het
84.9192
74.6057
98.5417
92.9073
946322946145
35.7143
gduggal-bwaplatINDELI6_15HG002complexvarhetalt
84.1254
73.6713
98.0371
62.0604
9013228991817
94.4444
gduggal-snapfbINDEL*map_l100_m2_e0*
93.4957
91.3079
95.7910
84.8783
3372321339114939
26.1745
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.3211
96.1768
98.4930
60.0607
80753218039123117
95.1220
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
86.9295
80.9834
93.8179
77.6360
136732113819139
42.8571
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
85.2596
74.3610
99.9015
32.1524
931321101411
100.0000
ltrigg-rtg1SNP*map_l250_m2_e0het
96.6769
93.8198
99.7135
80.2936
48733214873144
28.5714
ltrigg-rtg1SNPtiHG002complexvarhomalt
99.9028
99.8341
99.9715
18.2456
1931423211930495554
98.1818
bgallagher-sentieonSNP*map_l100_m2_e1*
99.4314
99.5705
99.2927
67.0857
744163217440553081
15.2830
bgallagher-sentieonSNPtimap_siren*
99.6181
99.6801
99.5561
54.0168
10003432110001944666
14.7982
anovak-vgINDELI1_5map_l125_m1_e0*
59.3006
61.3253
57.4054
86.4983
509321531394267
67.7665
anovak-vgINDELI6_15lowcmp_SimpleRepeat_diTR_11to50het
43.8638
34.2213
61.0721
38.4199
1673211390886815
91.9865
ckim-isaacINDEL*map_l100_m0_e0het
80.6462
68.5602
97.9050
88.4199
700321701155
33.3333
cchapple-customSNPtimap_l125_m0_e0het
95.6528
96.1152
95.1947
80.1979
79423217944401119
29.6758
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
82.2315
84.9860
79.6499
75.4433
18173211820465124
26.6667
cchapple-customSNP*map_l250_m2_e0*
96.1788
95.9417
96.4172
90.1898
7565320756228165
23.1317
ciseli-customSNPtimap_l250_m1_e0homalt
81.9434
80.0871
83.8878
86.5926
12873201286247174
70.4453
ciseli-customSNPtvmap_l250_m0_e0*
63.1004
58.1699
68.9441
95.6122
44532044420040
20.0000
hfeng-pmm2SNP*map_l100_m1_e0*
99.5195
99.5580
99.4810
66.0017
720833207207237647
12.5000