PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9551-9600 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | * | 94.2056 | 97.3045 | 91.2979 | 82.1654 | 12418 | 344 | 12317 | 1174 | 66 | 5.6218 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1200 | 95.0044 | 99.3320 | 25.8972 | 6542 | 344 | 6543 | 44 | 43 | 97.7273 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 92.8925 | 86.9894 | 99.6550 | 36.0629 | 2300 | 344 | 2311 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002compoundhet | * | 86.6377 | 85.3054 | 88.0123 | 33.8869 | 1997 | 344 | 1997 | 272 | 272 | 100.0000 | |
| astatham-gatk | SNP | tv | map_l250_m1_e0 | * | 92.5829 | 87.0042 | 98.9261 | 90.0355 | 2303 | 344 | 2303 | 25 | 7 | 28.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.4990 | 98.1160 | 98.8851 | 46.7540 | 17915 | 344 | 17916 | 202 | 197 | 97.5248 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.2926 | 96.8040 | 95.7866 | 41.7994 | 10389 | 343 | 10503 | 462 | 244 | 52.8139 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | * | 99.1748 | 98.6001 | 99.7563 | 54.0248 | 24158 | 343 | 24152 | 59 | 5 | 8.4746 | |
| mlin-fermikit | INDEL | * | map_l125_m0_e0 | het | 57.2159 | 41.5673 | 91.7603 | 82.1524 | 244 | 343 | 245 | 22 | 7 | 31.8182 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0366 | 99.3834 | 98.6923 | 64.9734 | 55288 | 343 | 55243 | 732 | 105 | 14.3443 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.5228 | 95.7439 | 99.3691 | 35.4149 | 7716 | 343 | 7718 | 49 | 49 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.5228 | 95.7439 | 99.3691 | 35.4149 | 7716 | 343 | 7718 | 49 | 49 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | het | 71.9569 | 57.6543 | 95.6967 | 78.7456 | 467 | 343 | 467 | 21 | 12 | 57.1429 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.7117 | 92.9088 | 77.8438 | 78.8648 | 4494 | 343 | 4455 | 1268 | 79 | 6.2303 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.0218 | 96.6030 | 99.4830 | 58.8566 | 9754 | 343 | 9622 | 50 | 26 | 52.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 80.5397 | 81.1435 | 79.9449 | 69.9648 | 1476 | 343 | 1160 | 291 | 202 | 69.4158 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 80.5397 | 81.1435 | 79.9449 | 69.9648 | 1476 | 343 | 1160 | 291 | 202 | 69.4158 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1468 | 92.6189 | 99.9541 | 23.6736 | 4304 | 343 | 4357 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.6332 | 95.7628 | 99.5781 | 24.7836 | 7752 | 343 | 7788 | 33 | 32 | 96.9697 | |
| jli-custom | INDEL | D6_15 | HG002compoundhet | hetalt | 97.6428 | 95.7919 | 99.5667 | 24.6880 | 7808 | 343 | 7812 | 34 | 33 | 97.0588 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9102 | 91.2700 | 94.6103 | 54.6326 | 3586 | 343 | 3581 | 204 | 197 | 96.5686 | |
| jli-custom | SNP | * | map_l125_m1_e0 | het | 99.0623 | 98.7919 | 99.3341 | 68.8001 | 28049 | 343 | 28046 | 188 | 54 | 28.7234 | |
| rpoplin-dv42 | SNP | ti | map_l100_m1_e0 | * | 99.4597 | 99.2844 | 99.6356 | 62.6996 | 47588 | 343 | 47581 | 174 | 118 | 67.8161 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.1644 | 85.5030 | 99.9515 | 30.1491 | 2023 | 343 | 2061 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3126 | 96.8244 | 99.8472 | 79.3514 | 10458 | 343 | 10458 | 16 | 4 | 25.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | HG002compoundhet | het | 87.2979 | 80.1505 | 95.8449 | 75.4255 | 1385 | 343 | 1384 | 60 | 57 | 95.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.0404 | 76.1806 | 98.8320 | 80.6905 | 1097 | 343 | 1100 | 13 | 2 | 15.3846 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 9.6515 | 5.2632 | 58.0645 | 68.3673 | 19 | 342 | 18 | 13 | 6 | 46.1538 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | * | 98.9368 | 98.8697 | 99.0039 | 73.9957 | 29916 | 342 | 29916 | 301 | 85 | 28.2392 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | * | 98.9476 | 98.8812 | 99.0140 | 74.0560 | 30227 | 342 | 30227 | 301 | 85 | 28.2392 | |
| ciseli-custom | INDEL | * | map_l150_m2_e1 | het | 67.0194 | 62.9870 | 71.6034 | 93.6172 | 582 | 342 | 585 | 232 | 136 | 58.6207 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.8836 | 92.6404 | 99.3621 | 26.9063 | 4305 | 342 | 4829 | 31 | 30 | 96.7742 | |
| astatham-gatk | SNP | * | HG002compoundhet | het | 98.6981 | 97.5878 | 99.8340 | 46.2177 | 13836 | 342 | 13834 | 23 | 22 | 95.6522 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | het | 98.6823 | 98.3530 | 99.0138 | 55.4973 | 20423 | 342 | 21686 | 216 | 103 | 47.6852 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9677 | 97.9853 | 99.9699 | 67.4084 | 16633 | 342 | 16633 | 5 | 5 | 100.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9677 | 97.9853 | 99.9699 | 67.4084 | 16633 | 342 | 16633 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9092 | 98.7644 | 97.0687 | 69.5742 | 27336 | 342 | 27419 | 828 | 294 | 35.5072 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 341 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 341 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 341 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | het | 80.7999 | 75.4853 | 86.9195 | 94.1195 | 1050 | 341 | 1123 | 169 | 24 | 14.2012 | |
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 341 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 74.3814 | 59.9765 | 97.8927 | 91.3619 | 511 | 341 | 511 | 11 | 10 | 90.9091 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 87.9792 | 78.9116 | 99.4012 | 47.6489 | 1276 | 341 | 166 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | * | map_l150_m1_e0 | * | 72.5622 | 74.5142 | 70.7099 | 89.9578 | 997 | 341 | 1026 | 425 | 224 | 52.7059 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.5967 | 90.2348 | 97.2188 | 50.5577 | 3151 | 341 | 3146 | 90 | 73 | 81.1111 | |
| egarrison-hhga | SNP | * | map_l150_m2_e1 | * | 99.3609 | 98.9413 | 99.7840 | 74.9205 | 31869 | 341 | 31869 | 69 | 32 | 46.3768 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 84.2141 | 73.5864 | 98.4298 | 33.7451 | 950 | 341 | 1003 | 16 | 15 | 93.7500 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1408 | 94.9941 | 99.3867 | 29.3238 | 6471 | 341 | 6482 | 40 | 39 | 97.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.2389 | 96.9229 | 97.5570 | 48.8051 | 10741 | 341 | 10742 | 269 | 266 | 98.8848 | |