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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
9451-9500 / 86044 show all
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.4903
94.0829
99.0241
51.3046
558135155815550
90.9091
hfeng-pmm1SNP*map_l125_m2_e1*
99.4713
99.2564
99.6872
70.6981
468513514684514741
27.8912
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.8440
91.1898
98.8034
58.6110
363335136334435
79.5455
hfeng-pmm1INDELI1_5*het
99.6416
99.5559
99.7275
59.6258
7869035178673215113
52.5581
ckim-dragenSNP*map_l150_m2_e0*
98.2382
98.8980
97.5872
78.4892
315013513150777994
12.0668
jli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8509
96.2242
99.5336
65.6849
894535189644241
97.6190
rpoplin-dv42SNP*map_l150_m1_e0*
99.0457
98.8533
99.2389
73.2840
3025835130252232150
64.6552
gduggal-bwaplatINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
67.6032
52.3810
95.2970
70.8303
3853503851919
100.0000
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
14.5540
7.8947
93.0000
54.7511
303509377
100.0000
gduggal-snapfbINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
0350000
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
0350000
gduggal-snapplatINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
0350000
ckim-isaacINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
71.9593
58.1340
94.4123
59.6109
4863504902918
62.0690
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.6055
95.7176
99.5693
26.7854
782335078603432
94.1176
jli-customINDELD6_15*hetalt
97.5456
95.7181
99.4442
33.1475
782435078724442
95.4545
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
0350000
hfeng-pmm1SNP*map_l125_m2_e0*
99.4680
99.2509
99.6861
70.6559
463733504636714641
28.0822
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.3108
98.0414
98.5817
67.0115
1747034917099246203
82.5203
ghariani-varprowlSNPtimap_l100_m0_e0*
97.9382
98.3970
97.4836
73.1519
2142234921423553140
25.3165
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
89.0761
81.4952
98.2120
71.9556
153734915382827
96.4286
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.2857
0.0000
0.0000
1349000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
81.5250
73.7594
91.1183
51.9309
9813492257220217
98.6364
ltrigg-rtg2INDELD1_5HG002compoundhethetalt
98.0424
96.5838
99.5458
62.4013
986734998634545
100.0000
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
66.2973
49.9283
98.6348
46.2385
34834928943
75.0000
rpoplin-dv42SNPtimap_l100_m2_e1*
99.4666
99.2947
99.6390
64.7230
4913634949129178121
67.9775
jli-customSNPtv*het
99.8561
99.9410
99.7714
21.8920
591347349591292135558
4.2804
ltrigg-rtg1SNP*HG002compoundhethet
98.6093
97.5384
99.7040
42.5144
1382934913809419
21.9512
egarrison-hhgaSNPtimap_l100_m1_e0*
99.5648
99.2719
99.8594
62.6430
47582349475836731
46.2687
ckim-gatkSNP*map_l250_m0_e0homalt
61.6062
44.5151
100.0000
96.2431
28034928000
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
88.4335
83.8126
93.5937
65.9030
1807349179712360
48.7805
cchapple-customSNPtvHG002complexvarhomalt
99.8120
99.6331
99.9915
20.8601
947623499415987
87.5000
ckim-dragenSNP*map_l150_m1_e0*
98.2024
98.8631
97.5505
76.7332
302613483026776093
12.2368
ckim-dragenSNPtimap_l100_m2_e1*
98.6777
99.2968
98.0664
68.9837
4913734849145969108
11.1455
mlin-fermikitINDELD1_5map_l150_m2_e1*
67.1787
55.2699
85.6287
82.9069
4303484297264
88.8889
gduggal-bwaplatINDELI1_5map_sirenhet
88.1317
79.2980
99.1803
89.9363
13333481331115
45.4545
hfeng-pmm1INDELD1_5HG002compoundhethet
87.4792
79.8611
96.7041
73.8541
138034813794744
93.6170
gduggal-snapfbINDELD1_5HG002complexvarhomalt
96.3093
96.7164
95.9056
58.3612
1025034810283439309
70.3872
egarrison-hhgaSNP*HG002compoundhethet
98.5499
97.5455
99.5752
43.4625
13830348138305931
52.5424
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.2095
94.9026
99.6314
23.5322
647934864882424
100.0000
ckim-isaacINDELI16_PLUSHG002complexvarhet
58.4929
47.6692
75.6757
61.6761
3173483089923
23.2323
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.9687
87.2567
99.4808
35.1295
237634724911313
100.0000
gduggal-snapfbINDEL*map_sirenhet
93.3260
92.3026
94.3724
79.8904
4161347429325657
22.2656
ckim-dragenINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6173
97.7724
99.4771
72.6068
15230347152188060
75.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.9687
87.2567
99.4808
35.1295
237634724911313
100.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.2173
94.9172
99.6315
23.5294
648034764892424
100.0000
ciseli-customINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
26.6490
16.9856
61.8182
56.0000
71347684232
76.1905
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.7883
91.0957
96.6448
54.7687
3550347354312390
73.1707
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
40.5822
0.0000
0.0000
237347000
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.8571
0.0000
0.0000
3347000
qzeng-customINDEL*map_l125_m1_e0het
82.2615
74.0824
92.4708
92.9115
989346126510335
33.9806