PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
9401-9450 / 86044 show all
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.3545
94.8591
99.9847
25.8525
6532354654410
0.0000
anovak-vgINDEL*map_l150_m2_e0*
72.9602
74.8580
71.1564
90.5195
10543541083439234
53.3030
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.0900
94.8591
99.4283
33.0075
653235466093838
100.0000
ckim-vqsrSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4494
99.3637
99.5353
61.3550
552773545526625827
10.4651
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
87.3498
78.5324
98.3974
44.5432
129535415352523
92.0000
egarrison-hhgaSNPtimap_l100_m2_e0*
99.5647
99.2770
99.8541
64.5210
48607354486087132
45.0704
egarrison-hhgaSNPtimap_l100_m2_e1*
99.5683
99.2846
99.8537
64.5157
49131354491327232
44.4444
egarrison-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
80.6539
91.2376
72.2705
67.9116
3686354391215011377
91.7388
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
81.6855
91.2376
73.9439
67.5049
3686354406114311308
91.4046
mlin-fermikitINDELD1_5map_l125_m1_e0het
67.0857
51.2397
97.1204
79.0685
372354371114
36.3636
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
27.9022
100.0000
137354000
ndellapenna-hhgaSNP*map_l125_m0_e0het
98.3855
97.2047
99.5955
74.1909
12310354123105023
46.0000
gduggal-bwaplatINDEL*map_l150_m1_e0het
73.6223
58.5965
99.0119
96.3513
50135450151
20.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.9862
97.5782
92.5283
63.5798
142633541413011411110
97.2831
ciseli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50het
83.4518
96.9037
73.2793
50.2099
1107935411126405761
1.5036
ciseli-customINDELI1_5map_sirenhet
73.5105
78.9411
68.7790
81.4258
13273541335606517
85.3135
gduggal-snapplatSNPtimap_l250_m2_e1homalt
88.8192
80.0226
99.7887
88.9408
1418354141733
100.0000
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
77.8419
75.4167
80.4284
80.2278
108635410892653
1.1321
gduggal-snapvardSNP*map_l125_m0_e0homalt
97.1180
94.7259
99.6341
71.0042
635835462632318
78.2609
gduggal-snapplatSNPtvmap_l250_m2_e1het
86.0422
82.0356
90.4602
95.1420
1612353161217070
41.1765
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4688
94.0129
99.0564
39.7188
554335355645346
86.7925
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4688
94.0129
99.0564
39.7188
554335355645346
86.7925
ltrigg-rtg2INDELD1_5*hetalt
97.9310
96.5544
99.3475
70.1886
9892353100496665
98.4848
ltrigg-rtg1SNPtimap_l150_m1_e0het
98.4476
97.1463
99.7841
64.1912
1201735312019265
19.2308
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.9536
94.8907
99.1081
52.4443
655635365565954
91.5254
asubramanian-gatkINDEL*map_l100_m2_e0het
89.6413
84.6987
95.1965
90.0770
195435319629913
13.1313
ckim-isaacSNP*map_l250_m0_e0homalt
60.9272
43.8792
99.6390
88.3516
27635327611
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
62.3092
51.9728
77.7778
57.5400
382353392112106
94.6429
ciseli-customINDEL*map_l125_m0_e0*
65.7143
59.9773
72.6648
92.6716
529353529199111
55.7789
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
91.8726
90.2567
93.5475
72.9167
32703533320229219
95.6332
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
77.5015
63.7949
98.7097
42.3792
62235315322
100.0000
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
67.2157
50.9066
98.9011
51.7881
36535236043
75.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
90.8247
87.1204
94.8579
42.0846
23813522103114109
95.6140
anovak-vgSNPtvmap_l150_m0_e0het
76.3189
87.6187
67.6007
87.1885
249135224851191350
29.3871
jlack-gatkSNPtimap_sirenhet
97.5925
99.4357
95.8164
66.8895
62030352620212708216
7.9764
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
4.9557
2.7624
24.0506
74.0984
10352196043
71.6667
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
55.6896
75.0355
44.2746
57.4199
1058352266433532340
69.7882
gduggal-snapplatINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
49.7249
53.1915
46.6825
69.1220
400352591675539
79.8519
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.8968
94.7123
73.7023
85.2096
63053526233222480
3.5971
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
83.8207
76.4233
92.8036
43.9496
11413526194837
77.0833
ltrigg-rtg1INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6359
97.7403
99.5481
71.8594
15225352154207031
44.2857
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
51.7623
87.4465
36.7612
44.5578
2452352243841943961
94.4444
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.0661
99.2298
98.9030
75.7127
453503524535050338
7.5547
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.0661
99.2298
98.9030
75.7127
453503524535050338
7.5547
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.6131
94.3079
99.0337
49.0411
583235258425726
45.6140
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.1948
95.7925
94.6045
46.7027
80143528013457181
39.6061
gduggal-snapplatSNPtimap_l250_m2_e0homalt
88.7618
79.9314
99.7857
88.9135
1398351139733
100.0000
gduggal-snapplatSNPtvmap_l250_m2_e0het
85.9616
81.9072
90.4382
95.1114
1589351158916870
41.6667
anovak-vgINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
15.5475
9.5361
42.0635
45.6897
37351537343
58.9041
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
63.9582
52.6316
81.4969
78.9220
3903513928911
12.3596