PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
9351-9400 / 86044 show all
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.5017
90.8883
94.1735
55.0486
35713583572221201
90.9502
qzeng-customINDEL*map_l125_m2_e0het
82.3208
74.2631
92.3398
93.0978
1033358132611036
32.7273
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
94.3116
95.7208
92.9434
47.3511
80083588008608274
45.0658
mlin-fermikitINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
48.6822
32.4528
97.3822
61.4141
17235818655
100.0000
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.9148
91.0141
94.8966
61.7747
36263583626195169
86.6667
gduggal-bwafbINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
53.5912
38.5935
87.6543
68.1102
225358711010
100.0000
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
76.6352
62.5131
99.0000
87.0298
59735859461
16.6667
ckim-vqsrSNPtiHG002compoundhet*
98.9109
97.9517
99.8891
36.4634
17120358171201917
89.4737
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1176
97.7691
98.4687
60.2554
1568935815690244227
93.0328
jmaeng-gatkINDELI1_5HG002complexvar*
99.3649
98.9270
99.8067
56.9963
33005358330516446
71.8750
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
79.3964
87.2325
72.8520
53.8546
24463582442910909
99.8901
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
81.6774
94.4237
71.9631
77.4935
6062358607823682066
87.2466
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
81.6774
94.4237
71.9631
77.4935
6062358607823682066
87.2466
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
75.4470
65.9048
88.2202
66.0139
6923586899270
76.0870
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
74.2610
59.0596
100.0000
28.0702
51535712300
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
22.2368
13.7681
57.7726
41.9919
57357249182181
99.4505
qzeng-customSNPtvmap_l250_m2_e1homalt
76.2953
62.2622
98.4950
89.7339
58935758999
100.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.9325
86.8895
99.8788
38.1155
2366357247333
100.0000
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.4262
96.9096
99.9911
63.7599
111953571119911
100.0000
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.4262
96.9096
99.9911
63.7599
111953571119911
100.0000
anovak-vgSNP*func_cds*
98.5581
98.0331
99.0887
29.8522
1779335717724163111
68.0982
rpoplin-dv42SNP*map_l150_m2_e1*
99.0777
98.8916
99.2644
75.0455
3185335731847236152
64.4068
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.1401
94.7708
99.6309
23.4581
647035764792424
100.0000
jli-customSNP*map_l150_m1_e0*
99.1511
98.8337
99.4706
71.1384
302523573024916158
36.0248
ciseli-customINDELD16_PLUSHG002compoundhethet
17.8807
11.8519
36.3934
44.8463
48357111194186
95.8763
egarrison-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3357
98.9921
99.6817
59.1116
350623573507011248
42.8571
egarrison-hhgaINDELI16_PLUS*hetalt
90.0034
83.0315
98.2535
51.8970
174235617443126
83.8710
egarrison-hhgaINDELI16_PLUSHG002compoundhethetalt
90.3511
82.9909
99.1438
40.2252
173735617371511
73.3333
bgallagher-sentieonSNP*HG002complexvarhet
99.9449
99.9235
99.9662
18.4844
46514135646501115750
31.8471
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.8269
92.5398
99.3561
30.5284
441635649383231
96.8750
qzeng-customSNPtvmap_l250_m2_e0homalt
76.0969
62.0064
98.4746
89.6799
58135658199
100.0000
gduggal-snapvardSNPtimap_l125_m0_e0het
88.1418
95.6916
81.6961
84.2040
790735678511759129
7.3337
gduggal-bwafbINDELI6_15*homalt
93.3335
94.2940
92.3923
40.2909
58833565878484482
99.5868
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
88.1690
79.1569
99.4968
31.0362
1352356138477
100.0000
hfeng-pmm2INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.7382
91.0643
98.7211
59.2029
362835636284739
82.9787
ckim-dragenSNP*map_l100_m1_e0het
98.1047
99.2152
97.0189
72.1356
45003356450091383119
8.6045
ckim-dragenSNP*map_l150_m2_e1*
98.2286
98.8948
97.5714
78.5708
318543563186079396
12.1059
ltrigg-rtg1INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.0639
76.7320
97.9798
69.7941
117435611642419
79.1667
ltrigg-rtg1INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.0639
76.7320
97.9798
69.7941
117435611642419
79.1667
ltrigg-rtg1SNPtimap_l150_m2_e1het
98.4983
97.2647
99.7636
66.7853
1265935612661305
16.6667
ltrigg-rtg2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3659
98.8427
99.8947
68.5558
30405356303503226
81.2500
ltrigg-rtg1SNPtimap_l150_m2_e0het
98.4904
97.2440
99.7691
66.6179
1252635512529295
17.2414
jpowers-varprowlINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
35.1693
26.0417
54.1485
80.6424
125355124105103
98.0952
eyeh-varpipeSNP**homalt
99.9696
99.9699
99.9693
17.3914
11798073551154702355142
40.0000
asubramanian-gatkINDELI1_5map_siren*
93.2137
88.1864
98.8489
83.6431
26503552662317
22.5806
gduggal-snapfbINDELD1_5HG002complexvarhetalt
78.9505
73.7426
84.9498
82.4839
9973555089054
60.0000
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
2.1108
1.1142
20.0000
87.1795
4355281
12.5000
rpoplin-dv42SNP*map_l150_m2_e0*
99.0736
98.8855
99.2624
74.9915
3149735531491234152
64.9573
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.1998
96.7133
99.7327
79.6799
1044635510447283
10.7143
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.7207
98.0134
95.4617
70.0763
1746535417080812691
85.0985