PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
8851-8900 / 86044 show all
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
31.5161
18.7373
99.1071
42.5641
9239911111
100.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
9.1116
0.0000
0.0000
40399000
astatham-gatkSNP*segdup*
99.1969
98.5784
99.8232
90.3648
27668399276624912
24.4898
asubramanian-gatkINDELI16_PLUS**
95.8942
93.7431
98.1463
72.1669
5978399598311395
84.0708
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2264
95.2551
99.2811
61.5901
801039980105849
84.4828
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
95.7078
0.0000
0.0000
8897399000
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.4487
74.1077
83.3299
46.2271
11423994044809800
98.8875
jlack-gatkINDELI1_5*het
99.1970
99.4952
98.9006
61.6913
7864239978625874231
26.4302
hfeng-pmm2INDELI1_5*het
99.6023
99.4952
99.7096
59.9116
7864239978624229130
56.7686
gduggal-snapfbINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
0.0000
0.0000
0.0000
0399000
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
60.8435
85.3147
47.2815
88.9072
231839922612521114
4.5220
gduggal-snapplatINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
0.0000
0.0000
0.0000
0399000
gduggal-snapplatINDELD1_5map_sirenhet
85.7607
82.4769
89.3168
89.6940
1878399215725842
16.2791
gduggal-snapvardINDEL*map_l100_m2_e0*
86.0203
89.1958
83.0632
86.5245
32943994561930439
47.2043
qzeng-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
83.9455
85.0094
82.9080
59.5221
22573983216663302
45.5505
mlin-fermikitINDELI1_5map_l125_m2_e0*
67.2515
53.6756
90.0196
80.9186
4603974605146
90.1961
gduggal-snapfbSNPtimap_l150_m2_e1homalt
97.2023
94.8395
99.6858
79.8530
729639772972314
60.8696
gduggal-snapplatINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
18.3861
14.4397
25.3012
64.2755
67397631864
2.1505
ghariani-varprowlSNPtimap_sirenhet
98.6913
99.3636
98.0280
62.9270
61985397619871247191
15.3168
cchapple-customINDELD1_5HG002complexvar*
99.2131
98.7865
99.6433
53.2355
323183973128811296
85.7143
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8615
94.2539
99.6175
50.6158
651239765112520
80.0000
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
86.8721
77.5325
98.7699
72.5739
137039713651715
88.2353
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
86.9339
77.1098
99.6266
47.5519
1334396133452
40.0000
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
88.0582
79.0032
99.4576
57.3453
1490396146787
87.5000
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
47.4256
81.8182
33.3900
61.2010
1782396176935293376
95.6645
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.1659
40.4511
53.7611
64.5212
269396243209202
96.6507
gduggal-bwafbINDELD16_PLUSHG002complexvar*
83.1933
75.8977
92.0405
54.5245
12473961272110107
97.2727
ghariani-varprowlSNPtimap_l125_m2_e1*
98.2162
98.7046
97.7326
76.3818
3017339630173700158
22.5714
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
1.4925
0.7519
100.0000
83.3333
3396300
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
85.9332
98.8085
76.0265
77.4229
3284039632867103649929
95.8028
gduggal-snapplatINDELI6_15lowcmp_SimpleRepeat_diTR_11to50het
19.2946
18.8525
19.7581
78.5095
92396491995
2.5126
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
19.3483
0.0000
0.0000
95396000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
88.2045
85.6313
90.9371
50.7128
23603962358235230
97.8723
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.4422
96.4266
98.4794
49.9423
1068639610686165162
98.1818
rpoplin-dv42SNP*map_l100_m2_e1het
99.2783
99.1577
99.3992
66.0072
4650339546491281142
50.5338
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
73.0631
58.4648
97.3776
92.1719
5563955571513
86.6667
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
17.0622
9.6110
75.9259
78.6561
42395411313
100.0000
egarrison-hhgaINDELD1_5*homalt
99.1875
99.1927
99.1824
59.4207
4853139548522400203
50.7500
egarrison-hhgaINDELD1_5HG002complexvarhet
97.8863
98.0978
97.6758
52.4481
2037039520424486392
80.6584
jlack-gatkSNPtv*het
99.3606
99.9332
98.7945
31.3268
5913013955912307214153
2.1209
ghariani-varprowlSNPtimap_l125_m2_e0*
98.2029
98.6946
97.7160
76.3322
2986339529863698158
22.6361
gduggal-snapfbSNPtimap_l150_m2_e0homalt
97.1871
94.8136
99.6825
79.8291
722139572222314
60.8696
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
17.0622
9.6110
75.9259
78.6561
42395411313
100.0000
cchapple-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.5568
89.9466
95.3230
44.4415
35343953954194181
93.2990
cchapple-customSNP*map_l150_m1_e0homalt
98.2123
96.4961
99.9908
66.3750
108783951087411
100.0000
cchapple-customSNPtvmap_sirenhet
97.1514
98.6228
95.7232
66.6384
28215394282911264181
14.3196
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.8091
85.5307
99.0822
46.3398
232939423752222
100.0000
gduggal-bwavardSNP*map_l150_m1_e0het
92.8051
97.9602
88.1654
84.8061
18922394186992510124
4.9402
rpoplin-dv42INDELI1_5*het
99.3402
99.5015
99.1794
60.2585
7864739478679651605
92.9339
gduggal-snapplatSNPtvmap_l125_m0_e0homalt
90.2668
82.2602
100.0000
75.6753
1827394182800