PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
85101-85150 / 86044 show all
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
0.0000
98.2249
99.6798
0016632
66.6667
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
0.0000
84.0909
99.9156
003777
100.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
42.6230
100.0000
27.0833
34.2466
130133531
88.5714
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.2441
30800
eyeh-varpipeINDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
97.3333
20400
eyeh-varpipeINDELD1_5map_l250_m0_e0hetalt
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5map_l250_m0_e0homalt
97.7778
100.0000
95.6522
97.5506
1302211
100.0000
eyeh-varpipeINDELD1_5segduphomalt
97.2973
100.0000
94.7368
94.2878
35903782120
95.2381
eyeh-varpipeINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9794
10300
eyeh-varpipeINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9761
10200
eyeh-varpipeINDELD1_5segdupwithalthetalt
0.0000
0.0000
100.0000
99.8771
00100
eyeh-varpipeINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
52.9412
80800
eyeh-varpipeINDELD1_5tech_badpromotershomalt
90.0000
100.0000
81.8182
26.6667
90922
100.0000
eyeh-varpipeINDELD6_15decoy*
100.0000
100.0000
100.0000
99.7758
10200
eyeh-varpipeINDELD6_15decoyhet
0.0000
0.0000
100.0000
99.8073
00100
eyeh-varpipeINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.1525
10100
eyeh-varpipeINDELD6_15decoyhomalt
0.0000
100.0000
00000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
88.8889
100.0000
80.0000
95.3271
30411
100.0000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
54.5455
100.0000
37.5000
88.8889
10355
100.0000
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
85.7143
100.0000
75.0000
96.0784
20311
100.0000
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
28.5714
89.5522
00255
100.0000
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
86.6667
20200
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
80.0000
10100
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
83.3333
10100
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15map_l150_m0_e0het
100.0000
100.0000
100.0000
92.4138
2002200
eyeh-varpipeINDELD6_15map_l150_m0_e0homalt
83.3333
100.0000
71.4286
93.9130
701044
100.0000
eyeh-varpipeINDELD6_15map_l150_m1_e0het
95.4545
100.0000
91.3043
89.6163
3904244
100.0000
eyeh-varpipeINDELD6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
97.1787
60900