PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
8451-8500 / 86044 show all
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
83.3645
86.4174
80.5198
60.1495
27744363005727352
48.4182
ltrigg-rtg2SNPtimap_l150_m2_e1het
98.2274
96.6500
99.8571
62.1754
1257943612581181
5.5556
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
74.7342
66.9196
84.6154
62.9705
882436924168144
85.7143
gduggal-bwafbSNPtimap_l100_m2_e0*
99.1045
99.1095
99.0994
68.4259
4852543648527441108
24.4898
gduggal-bwafbSNPtimap_l100_m2_e1*
99.1089
99.1189
99.0989
68.4487
4904943649051446108
24.2152
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
76.0853
63.1134
95.7692
72.6027
7464367473330
90.9091
gduggal-bwaplatSNPtvmap_l250_m0_e0het
38.3099
23.7762
98.5507
99.1755
13643613620
0.0000
gduggal-bwafbSNP*map_l150_m2_e1*
98.6663
98.6464
98.6862
78.1729
3177443631774423108
25.5319
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8169
93.8695
99.9554
27.7467
6676436671832
66.6667
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_51to200*
84.8454
79.2480
91.2936
44.8269
16654362590247237
95.9514
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.6969
92.8325
94.5775
63.9536
56474365529317301
94.9527
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9920
92.6052
99.6360
39.6618
546043654752020
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9920
92.6052
99.6360
39.6618
546043654752020
100.0000
egarrison-hhgaINDELD1_5HG002complexvarhetalt
79.1212
67.7515
95.0766
77.6746
9164368694542
93.3333
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
eyeh-varpipeINDEL*map_siren*
94.7665
94.1296
95.4122
91.1520
69754357882379279
73.6148
jlack-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1311
92.6743
99.8558
64.0650
5503435554087
87.5000
ltrigg-rtg2INDELI1_5*het
99.5106
99.4497
99.5716
56.0879
786064357786833592
27.4627
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
43.2760
32.9738
62.9412
68.5185
21443521412691
72.2222
ltrigg-rtg1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3400
95.3206
99.4468
70.6377
886143589885050
100.0000
gduggal-snapfbINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
0.0000
0.2294
0.0000
0.0000
1435000
gduggal-bwafbSNP*map_l150_m2_e0*
98.6575
98.6343
98.6808
78.1008
3141743531417420107
25.4762
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
48.0410
32.1373
95.1060
47.1096
2064355833030
100.0000
gduggal-bwavardSNP*map_l125_m2_e0homalt
98.6652
97.4964
99.8623
68.6081
16940435166852318
78.2609
gduggal-bwavardSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.2565
97.5239
96.9905
69.1218
1713343516952526189
35.9316
rpoplin-dv42SNP*map_l125_m2_e1*
99.2571
99.0784
99.4365
70.8435
4676743546761265170
64.1509
rpoplin-dv42INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4674
99.0988
97.8440
74.2336
47836435477871053987
93.7322
rpoplin-dv42INDELD16_PLUS**
94.4399
93.5879
95.3076
64.2354
63494356337312290
92.9487
cchapple-customSNPtv*homalt
99.9396
99.8847
99.9947
18.4432
3766884353760842017
85.0000
cchapple-customSNPtvmap_l125_m2_e0*
96.6110
97.3619
95.8717
75.9113
1605443516047691117
16.9320
cchapple-customSNPtvmap_l125_m2_e1*
96.6306
97.3885
95.8843
75.9688
1622243516215696117
16.8103
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
93.8836
0.0000
0.0000
6677435000
ciseli-customINDELD1_5map_sirenhet
83.5161
80.9398
86.2617
86.1336
1843434184629466
22.4490
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
78.2077
80.0368
76.4603
79.5968
174043417415366
1.1194
ltrigg-rtg2SNPtimap_l150_m2_e0het
98.2167
96.6307
99.8556
61.9797
1244743412450181
5.5556
qzeng-customINDELD16_PLUSHG002compoundhet*
75.9486
81.4609
71.1351
32.7367
19074342112857326
38.0397
jlack-gatkSNPtimap_l100_m1_e0*
97.4794
99.0945
95.9161
72.9428
47497434474902022193
9.5450
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.8306
94.1224
99.6991
48.9729
695043469592110
47.6190
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3971
97.0646
97.7319
53.7356
1435143414349333323
96.9970
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
91.1773
86.7440
96.0881
48.8639
2840434253010398
95.1456
eyeh-varpipeINDELD1_5*homalt
95.4519
99.1150
92.0499
59.2107
484934334844441844111
98.2553
gduggal-bwaplatINDELD6_15HG002compoundhethet
62.5277
49.4159
85.1107
78.7243
4234334237434
45.9459
hfeng-pmm3INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.6101
95.3421
99.9887
62.3644
8863433888110
0.0000
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
57.3545
40.9277
95.8084
61.2079
3004333201412
85.7143
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
73.7913
59.3427
97.5400
44.2387
6324337932013
65.0000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0680
94.6510
99.6117
25.8826
766243376963029
96.6667
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1910
92.7080
99.9459
61.2682
5505433554333
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000