PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84801-84850 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 92.5926 | 97.2644 | 0 | 0 | 25 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 83.3333 | 97.7143 | 0 | 0 | 10 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.2000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8457 | 0 | 0 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 93.1034 | 97.1202 | 0 | 0 | 27 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 84.6154 | 97.5655 | 0 | 0 | 11 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.2126 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.6647 | 0 | 0 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.2754 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.4083 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.8372 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.2318 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 97.9239 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.1132 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.4014 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 98.1073 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3146 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 98.4483 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 98.1481 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3784 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 88.0342 | 95.2993 | 0 | 0 | 103 | 14 | 5 | 35.7143 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 83.3333 | 95.1299 | 0 | 0 | 50 | 10 | 2 | 20.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 84.6154 | 96.8675 | 0 | 0 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 95.4545 | 94.7743 | 0 | 0 | 42 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 95.6522 | 99.0488 | 0 | 0 | 22 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 100.0000 | 99.2437 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 75.0000 | 99.0888 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 98.7326 | 0 | 0 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9486 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | segdupwithalt | het | 0.0000 | 0.0000 | 100.0000 | 99.8972 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | C1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | * | * | 89.4022 | 100.0000 | 80.8354 | 93.6057 | 7 | 0 | 329 | 78 | 51 | 65.3846 | |
| eyeh-varpipe | INDEL | C6_15 | * | het | 97.0297 | 100.0000 | 94.2308 | 93.5108 | 7 | 0 | 147 | 9 | 5 | 55.5556 | |
| eyeh-varpipe | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 83.6538 | 94.4474 | 0 | 0 | 87 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 64.6259 | 92.9598 | 0 | 0 | 95 | 52 | 33 | 63.4615 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | * | 91.6784 | 100.0000 | 84.6354 | 83.7632 | 4 | 0 | 325 | 59 | 49 | 83.0508 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | het | 98.2935 | 100.0000 | 96.6443 | 81.6953 | 4 | 0 | 144 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 86.0000 | 87.6847 | 0 | 0 | 86 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 70.3704 | 81.7321 | 0 | 0 | 95 | 40 | 31 | 77.5000 | |
| eyeh-varpipe | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 65.6489 | 85.9893 | 0 | 0 | 86 | 45 | 39 | 86.6667 | |
| eyeh-varpipe | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 97.7444 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||