PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
8301-8350 / 86044 show all
gduggal-bwafbSNP*map_l100_m1_e0het
98.6881
99.0035
98.3746
69.4458
4490745244909742142
19.1375
gduggal-snapvardSNPtimap_l150_m2_e1het
90.0889
96.5271
84.4559
85.0397
12563452124642294173
7.5414
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0184
92.3880
99.9457
61.4714
5486452552233
100.0000
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.8351
90.2733
99.8824
28.4609
4195452424854
80.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.6110
96.3981
98.8550
60.6748
1207045111914138125
90.5797
ciseli-customSNP*lowcmp_SimpleRepeat_diTR_11to50het
73.8977
92.7678
61.4068
68.2562
578545159193720112
3.0108
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
94.6023
95.2631
93.9507
47.7088
90704519070584265
45.3767
jpowers-varprowlSNPtvmap_l100_m2_e1het
96.9210
97.1703
96.6729
76.0613
1548745115487533100
18.7617
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.4419
95.8245
95.0624
80.9574
1035045110358538336
62.4535
gduggal-snapvardINDEL*map_sirenhomalt
89.9289
83.0132
98.1015
71.6674
220445123774640
86.9565
gduggal-snapvardSNPtimap_l125_m1_e0homalt
97.8107
95.9258
99.7712
66.1153
10595450104642419
79.1667
hfeng-pmm1SNP*map_l100_m2_e1*
99.5878
99.3979
99.7783
64.6489
742874507427616549
29.6970
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.5115
98.1663
98.8593
41.0712
2409045024092278270
97.1223
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
48.4456
45.3883
51.9444
59.2990
374450374346337
97.3988
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
60.5212
53.0761
70.3956
56.0815
509450516217206
94.9309
raldana-dualsentieonSNPtimap_siren*
99.5625
99.5516
99.5734
52.8084
999054509989042823
5.3738
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
69.4588
63.4740
76.6895
52.7315
782450783238217
91.1765
mlin-fermikitINDELD1_5map_l100_m1_e0het
75.8984
62.7792
95.9494
75.4582
7594507583218
56.2500
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
93.5407
95.2841
91.8599
48.3177
90724499073804405
50.3731
gduggal-bwafbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
92.7440
88.1997
97.7819
39.9778
335644915873636
100.0000
gduggal-bwaplatINDELI1_5map_l100_m1_e0*
79.6064
66.4675
99.2196
91.7555
89044989072
28.5714
hfeng-pmm1SNP*map_l100_m2_e0*
99.5855
99.3929
99.7787
64.6417
735154497350416349
30.0613
gduggal-snapvardSNPtimap_l150_m2_e0het
90.0316
96.5142
84.3650
84.9671
12432449123352286171
7.4803
anovak-vgINDELI16_PLUS*homalt
55.6761
71.2364
45.6948
36.9604
1112449114113561055
77.8024
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.0544
98.5583
99.5556
65.3417
30694449306941379
6.5693
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.0544
98.5583
99.5556
65.3417
30694449306941379
6.5693
ltrigg-rtg1INDELD1_5HG002complexvar*
99.1020
98.6275
99.5810
54.4390
322664493208813585
62.9630
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
21.6154
16.4179
31.6279
50.5178
88448136294156
53.0612
gduggal-bwavardSNPtimap_l125_m2_e1het
94.6705
97.6529
91.8649
83.0811
18639448184971638107
6.5324
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
42.6022
32.6316
61.3466
68.7695
217448246155138
89.0323
ciseli-customINDELD1_5map_l100_m2_e0*
79.9976
76.6057
83.7037
88.2507
14674481469286139
48.6014
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.6306
98.1744
99.0911
41.2071
2409244824094221211
95.4751
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.7497
95.9658
99.6012
27.0945
10657448107394342
97.6744
asubramanian-gatkINDELI1_5HG002complexvar*
99.2344
98.6572
99.8183
57.3625
32915448329676050
83.3333
asubramanian-gatkINDEL*map_l100_m2_e0*
92.1174
87.8960
96.7646
96.1178
3246447326010917
15.5963
anovak-vgSNPtimap_l250_m2_e0homalt
85.1522
74.4425
99.4611
88.0122
1302447129275
71.4286
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1837
96.7573
97.6138
51.8740
1333844713336326319
97.8528
jpowers-varprowlSNPtvmap_l100_m2_e0het
96.9118
97.1668
96.6583
76.0137
1533044715330530100
18.8679
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
60.0653
42.9847
99.6711
45.3237
33744730311
100.0000
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.6770
98.2373
99.1206
53.5009
2491244724909221216
97.7376
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8647
98.5647
99.1665
69.0402
306964473069525894
36.4341
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.8647
98.5647
99.1665
69.0402
306964473069525894
36.4341
gduggal-bwavardSNP*lowcmp_SimpleRepeat_diTR_11to50*
95.4182
95.3879
95.4484
71.2860
92454479143436182
41.7431
gduggal-bwavardSNPtimap_l125_m2_e0het
94.6336
97.6319
91.8139
83.0438
18429447182931631107
6.5604
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
77.5741
66.9623
92.1827
77.2517
9064479087724
31.1688
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
81.6460
74.6599
90.0744
85.4526
1317447145216015
9.3750
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.6487
95.5751
99.8142
40.4145
965544796701811
61.1111
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
96.4572
94.0150
99.0295
31.3640
700644670416948
69.5652
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_diTR_51to200*
82.1683
78.7720
85.8708
53.3827
16554461568258253
98.0620
ciseli-customINDEL*map_l100_m1_e0homalt
69.2990
63.6512
76.0467
84.7739
781446781246199
80.8943