PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
82851-82900 / 86044 show all
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
86.6667
100.0000
76.4706
60.4651
1301344
100.0000
gduggal-bwafbINDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.8421
30300
gduggal-bwafbINDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
97.2222
20200
gduggal-bwafbINDELD1_5map_l250_m0_e0hetalt
0.0000
100.0000
00000
gduggal-bwafbINDELD1_5map_l250_m0_e0homalt
100.0000
100.0000
100.0000
98.0882
1301300
gduggal-bwafbINDELD1_5map_l250_m1_e0homalt
100.0000
100.0000
100.0000
95.4726
5705700
gduggal-bwafbINDELD1_5map_l250_m2_e0homalt
100.0000
100.0000
100.0000
95.7717
6006000
gduggal-bwafbINDELD1_5map_l250_m2_e1homalt
100.0000
100.0000
100.0000
95.8904
6006000
gduggal-bwafbINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9942
10100
gduggal-bwafbINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9910
10100
gduggal-bwafbINDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
gduggal-bwafbINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
gduggal-bwafbINDELD1_5tech_badpromoters*
100.0000
100.0000
100.0000
40.6250
1901900
gduggal-bwafbINDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
41.1765
801000
gduggal-bwafbINDELD1_5tech_badpromotershetalt
0.0000
100.0000
0.0000
0.0000
20000
gduggal-bwafbINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
40.0000
90900
gduggal-bwafbINDELD6_15decoy*
100.0000
100.0000
100.0000
99.9165
10100
gduggal-bwafbINDELD6_15decoyhet
0.0000
0.0000
100.0000
99.8913
00100
gduggal-bwafbINDELD6_15decoyhetalt
100.0000
100.0000
10000
gduggal-bwafbINDELD6_15decoyhomalt
0.0000
100.0000
00000
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7444
30300
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.4000
20200
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
98.3607
00011
100.0000
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
87.5000
10100
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
85.7143
100.0000
75.0000
99.8385
60622
100.0000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
95.4545
100.0000
91.3043
37.8378
2102122
100.0000
gduggal-bwafbINDELD6_15map_l150_m0_e0hetalt
100.0000
100.0000
50000
gduggal-bwafbINDELD6_15map_l250_m0_e0het
88.8889
100.0000
80.0000
95.9677
40410
0.0000
gduggal-bwafbINDELD6_15map_l250_m0_e0hetalt
0.0000
100.0000
00000
gduggal-bwafbINDELD6_15map_l250_m1_e0het
96.0000
100.0000
92.3077
94.6281
1101210
0.0000
gduggal-bwafbINDELD6_15map_l250_m2_e0het
96.7742
100.0000
93.7500
94.4251
1401510
0.0000
gduggal-bwafbINDELD6_15map_l250_m2_e1het
96.7742
100.0000
93.7500
94.5392
1401510
0.0000
gduggal-bwafbINDELD6_15segduphomalt
94.3396
100.0000
89.2857
93.3492
5005066
100.0000
gduggal-bwafbINDELD6_15segdupwithalt*
0.0000
100.0000
00000
gduggal-bwafbINDELD6_15segdupwithalthet
0.0000
100.0000
00000
gduggal-bwafbINDELD6_15segdupwithalthetalt
0.0000
100.0000
00000
gduggal-bwafbINDELD6_15segdupwithalthomalt
0.0000
100.0000
00000
gduggal-bwafbINDELD6_15tech_badpromotershetalt
0.0000
100.0000
0.0000
0.0000
10000
gduggal-bwafbINDELD6_15tech_badpromotershomalt
92.3077
100.0000
85.7143
53.3333
60611
100.0000
gduggal-bwafbINDELI16_PLUSdecoy*
0.0000
100.0000
00000
gduggal-bwafbINDELI16_PLUSdecoyhet
0.0000
100.0000
00000
gduggal-bwafbINDELI16_PLUSdecoyhetalt
0.0000
100.0000
00000
gduggal-bwafbINDELI16_PLUSdecoyhomalt
0.0000
100.0000
00000
gduggal-bwafbINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
66.6667
20200
gduggal-bwafbINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000