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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
8001-8050 / 86044 show all
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3952
94.2799
98.6075
61.7292
79284817931112102
91.0714
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
95.4081
0.0000
0.0000
9994481000
ghariani-varprowlSNP*map_l150_m2_e1*
97.6142
98.5067
96.7377
80.7467
31729481317291070224
20.9346
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
83.7845
74.5493
95.6314
66.3759
140648014016453
82.8125
gduggal-snapfbINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
0.0000
0.0000
0.0000
0480000
gduggal-snapplatINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
0.0000
0.0000
0.0000
0480000
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.9344
96.1664
99.7686
57.4637
12041480120742818
64.2857
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1965
97.0144
99.4078
64.7466
15597480156119372
77.4194
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1965
97.0144
99.4078
64.7466
15597480156119372
77.4194
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
83.7845
74.5493
95.6314
65.9144
140648014016457
89.0625
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
83.2773
71.8970
98.9378
35.0419
122848013041410
71.4286
ciseli-customINDEL*map_l125_m2_e0het
68.9335
65.4925
72.7562
91.5977
911480916343203
59.1837
anovak-vgINDELI1_5map_l100_m1_e0het
47.9187
38.2239
64.2023
89.2961
29748033018431
16.8478
anovak-vgSNP*map_l250_m0_e0*
72.9992
77.5176
68.9786
95.8110
16554801641738163
22.0867
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
90.5655
87.6892
93.6369
59.5069
34194803414232224
96.5517
hfeng-pmm2INDELD6_15*hetalt
96.9508
94.1277
99.9483
34.1160
7694480774043
75.0000
hfeng-pmm2INDELD6_15HG002compoundhethetalt
96.9666
94.1234
99.9870
24.8188
7672479767510
0.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9125
94.0563
99.9476
30.4494
7580479762543
75.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9125
94.0563
99.9476
30.4494
7580479762543
75.0000
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.5111
56.6123
56.4103
93.4064
62547963849343
8.7221
gduggal-snapvardINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
9.6226
0.0000
0.0000
51479000
ghariani-varprowlSNP*map_l150_m2_e0*
97.6045
98.4962
96.7287
80.6842
31373479313731061223
21.0179
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
29.8168
22.2403
45.2229
54.6898
137479142172160
93.0233
rpoplin-dv42SNPtimap_siren*
99.6562
99.5227
99.7902
53.3616
9987647999868210138
65.7143
jli-customINDELD1_5HG002compoundhethetalt
97.3992
95.3113
99.5807
60.0898
973747997374140
97.5610
jli-customINDELI6_15HG002compoundhet*
95.9804
94.5419
97.4633
35.3700
82974798299216208
96.2963
ndellapenna-hhgaSNPtimap_l100_m1_e0het
99.0953
98.4002
99.8002
62.6312
29463479294655924
40.6780
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
94.1392
0.0000
0.0000
7694479000
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
6.1644
3.6217
20.6897
83.3652
18479186958
84.0580
anovak-vgINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
9.6226
0.0000
0.0000
51479000
bgallagher-sentieonINDEL*HG002complexvar*
99.4954
99.3774
99.6137
58.2041
7645947976328296257
86.8243
asubramanian-gatkSNPtvmap_l250_m0_e0het
28.2282
16.4336
100.0000
99.2644
944789400
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
16.9764
10.8209
39.3750
52.0958
58478639777
79.3814
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.0742
88.4708
95.9835
76.8106
3668478372815682
52.5641
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
62.9766
49.2569
87.2897
84.9168
464478467682
2.9412
jpowers-varprowlINDELD1_5HG002complexvarhomalt
96.2485
95.4897
97.0194
51.0621
1012047810058309250
80.9061
qzeng-customSNP*HG002compoundhet*
98.2824
98.1489
98.4164
46.9711
2534447825604412148
35.9223
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.8642
98.5648
91.4314
69.9321
327594773326031172975
95.4443
ltrigg-rtg2SNPtimap_l150_m2_e1*
98.7779
97.6982
99.8816
65.7932
2024647720250247
29.1667
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6358
95.7046
99.6464
30.5076
10628477107093837
97.3684
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.1571
94.8660
99.5615
32.7282
881447788553937
94.8718
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.1571
94.8660
99.5615
32.7282
881447788553937
94.8718
gduggal-snapplatINDELI1_5HG002compoundhethet
19.8395
43.8824
12.8171
74.6754
3734774853299129
3.9103
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
26.6154
0.0000
0.0000
173477000
gduggal-snapvardINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
1.2251
0.6250
30.7692
75.3555
3477163611
30.5556
ghariani-varprowlINDELD1_5HG002complexvarhomalt
95.9196
95.4992
96.3438
51.1776
1012147710066382245
64.1361
jmaeng-gatkSNPtimap_l250_m0_e0het
64.8227
48.9293
96.0084
98.4090
457477457192
10.5263
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
92.8504
88.1608
98.0670
34.4871
355247715223030
100.0000
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
37.3529
30.5677
48.0100
79.3529
210477193209153
73.2057
egarrison-hhgaSNP*HG002complexvarhomalt
99.8875
99.8351
99.9400
19.8887
288098476288126173140
80.9249