PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1602 1603 1604 1605 1606 1607 1608 1609 1610 ... 1720 1721 » 80251-80300 / 86044 show all
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	het	73.6842	100.0000	58.3333	83.5616	2	0	7	5	4	80.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	map_l250_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	tech_badpromoters	het	66.6667	100.0000	50.0000	55.5556	8	0	6	6	5	83.3333
gduggal-snapvard	INDEL	I6_15	decoy	*		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	decoy	het		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	decoy	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000	0.0000	99.9462	0	0	0	1	1	100.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	het	0.0000	100.0000	0.0000	87.5000	1	0	0	1	1	100.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	map_l125_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	map_l150_m0_e0	het	74.4186	100.0000	59.2593	91.4013	4	0	16	11	8	72.7273
gduggal-snapvard	INDEL	I6_15	map_l150_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	map_l250_m0_e0	het	0.0000	0.0000	37.5000	95.5056	0	0	3	5	3	60.0000
gduggal-snapvard	INDEL	I6_15	map_l250_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	map_l250_m1_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	map_l250_m2_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	map_l250_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge