PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
751-800 / 86044 show all
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.5382
0.0000
0.0000
509241000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.5382
0.0000
0.0000
509241000
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.6024
0.0000
0.0000
569240000
gduggal-bwaplatSNPtimap_l100_m0_e0*
72.8908
57.5582
99.3581
86.0136
125319240125378126
32.0988
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.8104
37.5245
44.7270
52.3629
55489237550568036744
99.1327
gduggal-snapfbINDEL*HG002complexvar*
90.4920
87.9994
93.1300
55.3026
6770592336929851122371
46.3811
ckim-gatkSNP*map_l100_m0_e0*
82.8691
71.9040
97.7802
83.9171
2361492272361053648
8.9552
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
56.5705
40.1699
95.6035
76.3129
6193922410155467451
96.5739
jmaeng-gatkSNP*map_l100_m0_e0*
82.8475
71.9345
97.6638
84.1509
2362492172362056548
8.4956
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
70.3371
62.5265
80.3777
56.0717
1534491961838844892592
57.7411
gduggal-bwaplatSNPtiHG002complexvarhet
97.7064
97.0801
98.3410
19.6959
30557591913061615165589
11.4037
qzeng-customSNP*map_l100_m0_e0*
82.6366
72.0228
96.9194
83.3401
23653918823407744630
84.6774
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.8755
85.9451
94.1826
54.7512
5616691855545034252525
73.7226
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
89.8755
85.9451
94.1826
54.7512
5616691855545034252525
73.7226
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.1515
85.9467
88.3906
61.9558
5616791845597673527082
96.3275
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.1515
85.9467
88.3906
61.9558
5616791845597673527082
96.3275
eyeh-varpipeINDELI6_15**
71.2994
63.0343
82.0590
39.8519
1564791761573434403408
99.0698
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
73.1589
71.4116
74.9939
43.9770
228469146337931126811182
99.2368
ckim-vqsrSNP*map_l125_m2_e1het
81.3082
69.1532
98.6474
89.1453
204979143204942814
1.4235
mlin-fermikitINDEL**hetalt
77.7361
63.8348
99.3774
60.1130
16110912716282102100
98.0392
mlin-fermikitINDEL*HG002compoundhethetalt
77.7377
63.7887
99.4948
53.3255
160629118161508281
98.7805
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
37.1023
33.8847
40.9951
49.8226
46719114463966776648
99.5657
gduggal-bwaplatINDEL*HG002compoundhet*
80.3779
69.5961
95.1127
70.6361
208519109208431071677
63.2120
ckim-vqsrSNP*map_l125_m2_e0het
81.2064
69.0122
98.6348
89.1411
202339085202302804
1.4286
asubramanian-gatkSNP*map_l150_m1_e0homalt
32.6455
19.5068
100.0000
91.9371
21999074219900
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
46.6247
43.6219
50.0715
62.1939
70009047700369836898
98.7828
ckim-gatkSNP*map_sirenhomalt
91.0516
83.5974
99.9653
55.1658
461099047461001614
87.5000
asubramanian-gatkSNPtimap_l150_m1_e0het
42.4790
26.9846
99.7608
94.8360
33389032333684
50.0000
gduggal-bwaplatINDELD1_5*het
94.1987
89.7070
99.1640
66.4739
78560901478527662219
33.0816
ckim-isaacSNPtimap_l150_m2_e1*
72.1848
56.5603
99.7362
77.6680
11721900211721317
22.5806
gduggal-snapfbINDEL**hetalt
71.6867
64.3698
80.8803
78.7792
16245899257701364830
60.8504
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
51.1782
35.9607
88.7235
60.7545
504689865067644550
85.4037
jmaeng-gatkSNP*map_sirenhomalt
91.1261
83.7262
99.9610
54.5250
461808976461711818
100.0000
gduggal-snapfbINDEL*HG002compoundhethetalt
76.0060
64.4003
92.7141
74.7872
1621689645739451378
83.8137
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
64.5118
50.6716
88.7536
66.8832
9205896191861164976
83.8488
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
64.5118
50.6716
88.7536
66.8832
9205896191861164976
83.8488
ckim-vqsrSNP*map_l125_m1_e0het
80.8165
68.4629
98.6098
88.4760
194388954194352743
1.0949
mlin-fermikitSNPtvmap_sirenhet
80.8694
68.7161
98.2452
51.7745
196598950196513513
0.8547
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
64.6659
50.7487
89.1009
66.3976
9219894791971125989
87.9111
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
64.6659
50.7487
89.1009
66.3976
9219894791971125989
87.9111
ckim-isaacINDEL*HG002complexvar*
91.9300
88.4153
95.7357
48.5598
6802589136703729861352
45.2780
ckim-isaacSNPtimap_l150_m2_e0*
72.1859
56.5571
99.7506
77.5984
11601891111601295
17.2414
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
55.1228
49.5784
62.0635
51.0444
87618910897554864728
86.1830
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
55.1228
49.5784
62.0635
51.0444
87618910897554864728
86.1830
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
46.7074
0.0000
0.0000
78028902000
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
46.7074
0.0000
0.0000
78028902000
ckim-isaacSNPtimap_l100_m2_e1het
83.1462
71.2597
99.7920
67.1300
22062889822066464
8.6957
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
47.5340
42.9094
53.2758
84.2729
6684889368556012485
8.0672
gduggal-bwaplatINDELI1_5*het
93.5751
88.7894
98.9060
66.7915
70180886170159776424
54.6392
mlin-fermikitSNP*map_l100_m2_e1homalt
74.4467
68.1285
82.0565
52.6294
1893788591893741413961
95.6532