PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
79801-79850 / 86044 show all
gduggal-snapvardINDELD16_PLUSmap_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELD16_PLUSmap_l250_m0_e0homalt
0.0000
100.0000
00000
gduggal-snapvardINDELD16_PLUSmap_l250_m1_e0homalt
0.0000
100.0000
00000
gduggal-snapvardINDELD16_PLUSsegdupwithalt*
0.0000
100.0000
00000
gduggal-snapvardINDELD16_PLUSsegdupwithalthet
0.0000
100.0000
00000
gduggal-snapvardINDELD16_PLUSsegdupwithalthetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELD16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
gduggal-snapvardINDELD16_PLUStech_badpromotershetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELD16_PLUStech_badpromotershomalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELD1_5decoyhet
85.7143
100.0000
75.0000
99.9649
20310
0.0000
gduggal-snapvardINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9097
10100
gduggal-snapvardINDELD1_5func_cdshet
87.2852
100.0000
77.4390
47.4359
8501273733
89.1892
gduggal-snapvardINDELD1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
99.8173
70222
100.0000
ghariani-varprowlINDELD6_15map_l150_m0_e0het
86.9565
100.0000
76.9231
95.7096
2002066
100.0000
ghariani-varprowlINDELD6_15map_l150_m1_e0het
86.6667
100.0000
76.4706
94.7639
390391211
91.6667
ghariani-varprowlINDELD6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
98.4887
60600
ghariani-varprowlINDELD6_15map_l250_m0_e0het
100.0000
100.0000
100.0000
98.8439
40400
ghariani-varprowlINDELD6_15map_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.0784
20200
ghariani-varprowlINDELD6_15map_l250_m1_e0het
91.6667
100.0000
84.6154
97.7966
1101121
50.0000
ghariani-varprowlINDELD6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
93.8272
50500
ghariani-varprowlINDELD6_15map_l250_m2_e0het
93.3333
100.0000
87.5000
97.6190
1401421
50.0000
ghariani-varprowlINDELD6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
93.4066
60600
ghariani-varprowlINDELD6_15map_l250_m2_e1het
93.3333
100.0000
87.5000
97.6710
1401421
50.0000
ghariani-varprowlINDELD6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
93.5484
60600
ghariani-varprowlINDELD6_15segdupwithalt*
0.0000
100.0000
00000
ghariani-varprowlINDELD6_15segdupwithalthet
0.0000
100.0000
00000
ghariani-varprowlINDELD6_15segdupwithalthetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELD6_15segdupwithalthomalt
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSHG002compoundhethomalt
7.5000
100.0000
3.8961
67.2340
3037473
98.6486
ghariani-varprowlINDELI16_PLUSdecoy*
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSdecoyhet
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSdecoyhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI16_PLUSdecoyhomalt
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI16_PLUSlowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000