PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1560 1561 1562 1563 1564 1565 1566 1567 1568 ... 1720 1721 » 78151-78200 / 86044 show all
jmaeng-gatk	INDEL	I1_5	map_l250_m0_e0	homalt	94.7368	100.0000	90.0000	96.7638	9	0	9	1	1	100.0000
jmaeng-gatk	INDEL	I1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	98.0392	2	0	2	0	0
jmaeng-gatk	INDEL	I1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	98.4127	2	0	2	0	0
jmaeng-gatk	INDEL	I1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	98.4375	2	0	2	0	0
jmaeng-gatk	INDEL	I1_5	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	53.1915	22	0	22	0	0
jmaeng-gatk	INDEL	I1_5	tech_badpromoters	het	100.0000	100.0000	100.0000	42.8571	8	0	8	0	0
jmaeng-gatk	INDEL	I1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	50.0000	1	0	1	0	0
jmaeng-gatk	INDEL	I1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	58.0645	13	0	13	0	0
jmaeng-gatk	INDEL	I6_15	HG002compoundhet	homalt	17.2702	100.0000	9.4512	62.3853	31	0	31	297	295	99.3266
jmaeng-gatk	INDEL	I6_15	decoy	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	decoy	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	func_cds	het	97.9592	100.0000	96.0000	44.4444	24	0	24	1	0	0.0000
jmaeng-gatk	INDEL	I6_15	func_cds	homalt	100.0000	100.0000	100.0000	42.3077	15	0	15	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	92.9134	100.0000	86.7647	77.2575	59	0	59	9	9	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.8277	100.0000	95.7478	73.3906	653	0	653	29	28	96.5517
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.2973	100.0000	94.7368	69.6000	36	0	36	2	2	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4595	100.0000	98.9247	70.0000	92	0	92	1	1	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	70.8155	68	0	68	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	88.8889	100.0000	80.0000	80.0000	24	0	24	6	6	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	93.7778	100.0000	88.2845	69.8232	211	0	211	28	27	96.4286
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.4724	100.0000	89.5238	67.9878	188	0	188	22	21	95.4545
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.3988	100.0000	91.2023	70.8298	311	0	311	30	29	96.6667
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	96.5300	100.0000	93.2927	77.6871	153	0	153	11	10	90.9091
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	100.0000	100.0000	100.0000	81.5094	49	0	49	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.8691	2	0	2	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.3691	2	0	2	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge