PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1555 1556 1557 1558 1559 1560 1561 1562 1563 ... 1720 1721 » 77901-77950 / 86044 show all
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	41.6155	1330	0	1330	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	het	100.0000	100.0000	100.0000	87.7358	13	0	13	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	92.8571	100.0000	86.6667	59.4595	13	0	13	2	2	100.0000
jmaeng-gatk	INDEL	D1_5	map_l250_m0_e0	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	97.3415	13	0	13	0	0
jmaeng-gatk	INDEL	D1_5	segdup	homalt	99.7222	100.0000	99.4460	94.5203	359	0	359	2	2	100.0000
jmaeng-gatk	INDEL	D1_5	segdupwithalt	*	100.0000	100.0000	100.0000	99.9960	1	0	1	0	0
jmaeng-gatk	INDEL	D1_5	segdupwithalt	het	100.0000	100.0000	100.0000	99.9948	1	0	1	0	0
jmaeng-gatk	INDEL	D1_5	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
jmaeng-gatk	INDEL	D1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	43.7500	9	0	9	0	0
jmaeng-gatk	INDEL	D6_15	HG002compoundhet	homalt	26.0870	100.0000	15.0000	70.0375	24	0	24	136	135	99.2647
jmaeng-gatk	INDEL	D6_15	decoy	*	100.0000	100.0000	100.0000	99.9558	1	0	1	0	0
jmaeng-gatk	INDEL	D6_15	decoy	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D6_15	decoy	hetalt	100.0000	100.0000	100.0000	99.2754	1	0	1	0	0
jmaeng-gatk	INDEL	D6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	57.0000	43	0	43	0	0
jmaeng-gatk	INDEL	D6_15	func_cds	het	100.0000	100.0000	100.0000	56.0606	29	0	29	0	0
jmaeng-gatk	INDEL	D6_15	func_cds	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
jmaeng-gatk	INDEL	D6_15	func_cds	homalt	100.0000	100.0000	100.0000	58.6207	12	0	12	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	97.1831	6	0	6	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.8102	3	0	3	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	98.2456	1	0	1	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8506	100.0000	97.7273	77.0833	43	0	43	1	1	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	97.8723	4	0	4	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	98.3740	2	0	2	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	83.3333	2	0	2	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7333	100.0000	99.4681	59.7861	374	0	374	2	1	50.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	67.7888	487	0	487	1	1	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7093	100.0000	99.4203	57.5646	343	0	343	2	1	50.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	92.0000	2	0	2	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	92.8571	1	0	1	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	75.0000	1	0	1	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3590	100.0000	98.7261	85.0476	155	0	155	2	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	100.0000	100.0000	100.0000	82.0388	74	0	74	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.1758	9	0	9	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	92.3077	100.0000	85.7143	99.7745	6	0	6	1	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge