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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
7701-7750 / 86044 show all
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6178
95.3805
99.9625
30.9240
105925131067143
75.0000
gduggal-snapplatINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
31.6644
21.5926
59.3458
76.4835
1415121278736
41.3793
gduggal-snapplatSNP*map_l250_m0_e0*
83.7909
76.0187
93.3333
96.5523
1623512162411643
37.0690
raldana-dualsentieonSNPtvHG002compoundhet*
96.9959
94.2620
99.8931
47.1699
8411512841095
55.5556
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8830
96.2858
97.4877
51.4550
1327351213271342335
97.9532
ltrigg-rtg1SNPtimap_l100_m1_e0het
99.0192
98.2900
99.7593
54.6205
2943051229432717
9.8592
jli-customINDELD1_5HG002compoundhet*
97.1251
95.8153
98.4712
65.0788
1172351211723182174
95.6044
gduggal-bwavardSNPtimap_l100_m2_e0homalt
98.5295
97.2036
99.8921
62.3227
17797512175971915
78.9474
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.9117
92.0249
89.8250
65.4470
59085125853663643
96.9834
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.9117
92.0249
89.8250
65.4470
59085125853663643
96.9834
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.2736
92.8150
100.0000
26.1913
6601511664500
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
21.7822
12.3499
92.2018
54.2977
725112011717
100.0000
ckim-isaacINDELD1_5map_l100_m2_e1*
84.2482
73.6462
98.4160
83.3218
142851114292311
47.8261
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.5969
93.7477
99.6247
26.3674
766251176982929
100.0000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
62.2829
56.8163
68.9135
42.3099
671510685309288
93.2039
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.9473
78.4628
90.2562
82.3482
18585101973213125
58.6854
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6034
93.7599
99.6247
26.3649
766351076992929
100.0000
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.9208
96.5506
97.2938
53.6376
1427551014273397386
97.2292
astatham-gatkINDELD1_5*hetalt
97.2343
95.0220
99.5520
63.2355
973551097784443
97.7273
eyeh-varpipeSNP*HG002complexvarhet
99.8105
99.8904
99.7307
18.2348
4649905104296101160174
15.0000
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1341
96.7259
99.5838
73.0521
15067510150756345
71.4286
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9263
98.3656
99.4933
72.9052
306345093063415620
12.8205
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9263
98.3656
99.4933
72.9052
306345093063415620
12.8205
ckim-isaacINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.9438
72.3670
91.8269
61.8148
1333509133711966
55.4622
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.0378
96.8281
99.2780
56.6258
1553850915539113101
89.3805
gduggal-snapvardSNP*map_l150_m2_e1homalt
97.6681
95.6963
99.7228
73.2280
11318509111533125
80.6452
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
71.9347
56.7912
98.0910
82.9452
669509668138
61.5385
gduggal-bwaplatINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
62.3378
47.0343
92.4025
85.6385
4525094503714
37.8378
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.5181
93.7722
99.4296
26.3580
766450976704443
97.7273
asubramanian-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.1790
86.6893
98.4109
40.6421
331550935305749
85.9649
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
95.4255
0.0000
0.0000
10597508000
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.0502
96.8343
99.2971
55.9217
155395081554011095
86.3636
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0410
96.8402
99.2720
68.1668
155695081554611494
82.4561
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0410
96.8402
99.2720
68.1668
155695081554611494
82.4561
cchapple-customINDELD6_15*hetalt
0.0000
93.7852
0.0000
0.0000
7666508000
ciseli-customSNPtiHG002compoundhethomalt
81.8243
93.1296
72.9667
35.5461
688650868722546564
22.1524
cchapple-customSNPtvHG002complexvarhet
99.7615
99.6630
99.8602
21.5432
150223508149954210146
69.5238
ckim-isaacINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
83.2219
72.1186
98.3665
35.2346
131450813852322
95.6522
gduggal-snapvardSNPtvmap_l125_m2_e0*
93.1565
96.9192
89.6752
79.7699
15981508159291834123
6.7067
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
80.6843
72.0726
91.6333
55.4102
13115082749251244
97.2112
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
80.6843
72.0726
91.6333
55.4102
13115082749251244
97.2112
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
95.2832
91.6502
99.2161
44.8245
556550755694430
68.1818
bgallagher-sentieonINDELD6_15*hetalt
96.5632
93.7974
99.4971
32.7057
766750777163938
97.4359
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.4583
97.2091
99.7401
57.5217
17659507176534639
84.7826
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.4583
97.2091
99.7401
57.5217
17659507176534639
84.7826
ltrigg-rtg2SNP*map_l150_m0_e0*
97.7647
95.7862
99.8267
65.0696
1152550711521204
20.0000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.7869
93.7966
99.9740
28.5303
7666507770121
50.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
78.8680
83.9810
74.3417
54.2249
26585072654916914
99.7817
ckim-vqsrSNPtimap_l250_m0_e0het
62.2449
45.7173
97.4886
98.4812
427507427110
0.0000
egarrison-hhgaINDELD6_15HG002complexvarhetalt
65.3629
50.0494
94.1788
58.1739
5075064532824
85.7143