PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
7451-7500 / 86044 show all
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50*
96.4963
97.0192
95.9791
41.7450
1764154217783745376
50.4698
gduggal-snapvardINDELI6_15HG002complexvarhet
67.8635
76.9851
60.6744
48.9450
1813542239315511213
78.2076
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.5302
93.3045
99.9868
25.2315
7553542758810
0.0000
ckim-vqsrSNP*segdup*
98.8099
98.0689
99.5622
93.7251
275255422751912112
9.9174
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.9868
95.2804
94.6949
56.1929
1094254210942613287
46.8189
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
74.2906
94.9819
61.0017
81.9477
10259542103416611313
4.7345
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
60.9341
95.6793
44.7012
53.4443
11980541120511490814726
98.7792
astatham-gatkSNPtimap_l250_m1_e0het
89.5242
81.7722
98.8998
92.0567
24275412427279
33.3333
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
24.8881
14.3987
91.6667
67.0000
915411211111
100.0000
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
77.7114
64.9157
96.7899
84.6384
10015419953312
36.3636
mlin-fermikitINDELI1_5map_l100_m2_e0*
72.7673
60.4532
91.3812
78.4780
8275418277868
87.1795
jpowers-varprowlSNPtimap_l150_m2_e1het
96.4360
95.8433
97.0362
82.0973
1247454112474381131
34.3832
hfeng-pmm1INDELD1_5*hetalt
97.2784
94.7194
99.9795
63.7385
9704541974821
50.0000
hfeng-pmm1INDELD1_5HG002compoundhethetalt
97.2704
94.7044
99.9793
59.1395
9675541967521
50.0000
gduggal-bwaplatINDELD1_5map_l100_m1_e0*
82.4716
70.7792
98.7915
91.7846
13085401308166
37.5000
ghariani-varprowlINDEL*map_siren*
90.8910
92.7126
89.1397
90.4253
68705406870837449
53.6440
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
73.0270
60.6987
91.6395
81.0025
834540844772
2.5974
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
60.4335
56.1688
65.3989
55.6013
692540705373177
47.4531
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
51.8014
43.6913
63.6086
59.7043
419540416238213
89.4958
rpoplin-dv42SNP*map_l100_m2_e1*
99.4091
99.2775
99.5411
65.1919
7419754074186342199
58.1871
qzeng-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.3828
98.2445
96.5360
67.1067
302215404514716201222
75.4321
ndellapenna-hhgaINDELI1_5HG002complexvar*
98.8448
98.3844
99.3095
53.7677
3282453932792228116
50.8772
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5155
98.1227
98.9115
70.9579
281735392816931055
17.7419
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5155
98.1227
98.9115
70.9579
281735392816931055
17.7419
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50het
88.8266
96.5799
82.2256
51.6201
152215391610834823306
94.9454
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
37.6590
1078539122500
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
94.1987
0.0000
0.0000
8752539000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
94.1987
0.0000
0.0000
8752539000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
26.4385
22.6686
31.7125
37.5578
158539300646514
79.5666
hfeng-pmm3SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1881
98.4782
99.9083
59.9451
3488053934871328
25.0000
gduggal-snapfbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.4732
99.0329
79.9484
69.7226
550935385547713914538
3.8666
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
73.2832
58.3269
98.5549
37.2051
753538682108
80.0000
gduggal-bwavardINDELD16_PLUS*homalt
80.8672
68.2033
99.3062
53.9537
1154538114587
87.5000
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
36.6612
27.4933
55.0021
33.8540
20453812811048886
84.5420
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
62.4653
60.2952
64.7975
51.6129
8175381040565411
72.7434
astatham-gatkINDELD1_5HG002compoundhet*
96.5582
95.6110
97.5244
66.3015
1169853711700297294
98.9899
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
72.3907
57.0056
99.1501
60.4038
71253770065
83.3333
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
72.3907
57.0056
99.1501
60.4038
71253770065
83.3333
gduggal-bwavardSNPtvmap_l100_m1_e0*
95.8710
97.8083
94.0091
75.1618
2396453723883152297
6.3732
jlack-gatkSNPtiHG002complexvar*
99.9170
99.8944
99.9396
17.8349
507899537507834307122
39.7394
rpoplin-dv42SNP*map_l100_m2_e0*
99.4070
99.2740
99.5404
65.1757
7342753773416339198
58.4071
jpowers-varprowlSNPtimap_l150_m2_e0het
96.4300
95.8311
97.0364
82.0218
1234453712344377130
34.4828
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
45.2707
43.8743
46.7588
85.7511
41953644050111
2.1956
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
85.7504
85.7485
85.7523
74.5958
32255363220535212
39.6262
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
85.7504
85.7485
85.7523
74.5958
32255363220535212
39.6262
mlin-fermikitSNPtvmap_l250_m2_e1homalt
50.9001
43.3404
61.6541
74.8392
410536410255239
93.7255
ckim-isaacINDELI6_15HG002complexvarhetalt
70.4127
56.1733
94.3226
46.2179
6875367314430
68.1818
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
73.5572
58.5593
98.8827
38.1693
75653570888
100.0000
egarrison-hhgaSNPtimap_siren*
99.6715
99.4669
99.8769
52.8764
998205359982112354
43.9024
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
73.9330
59.3156
98.1108
66.7086
7805357791510
66.6667