PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71901-71950 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 62.1795 | 59 | 0 | 59 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.8305 | 12 | 0 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 97.0588 | 100.0000 | 94.2857 | 87.3646 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 97.0588 | 100.0000 | 94.2857 | 88.4868 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 97.0588 | 100.0000 | 94.2857 | 88.7097 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 93.7500 | 100.0000 | 88.2353 | 91.1458 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 93.7500 | 100.0000 | 88.2353 | 92.2374 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 93.7500 | 100.0000 | 88.2353 | 92.4444 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.0299 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 94.6309 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2308 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 95.3757 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 94.1176 | 100.0000 | 88.8889 | 94.9721 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 99.4286 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6190 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6292 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.5172 | 10 | 0 | 10 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1406 | 15 | 0 | 15 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||