PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71001-71050 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.3051 | 100.0000 | 96.6667 | 87.7049 | 29 | 0 | 29 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 97.9487 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 97.9730 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 88.0000 | 100.0000 | 78.5714 | 97.5395 | 11 | 0 | 11 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5357 | 5 | 0 | 5 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 90.3226 | 100.0000 | 82.3529 | 97.3725 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4198 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 90.3226 | 100.0000 | 82.3529 | 97.4551 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5882 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | segdup | homalt | 97.0874 | 100.0000 | 94.3396 | 91.8462 | 50 | 0 | 50 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 51.4286 | 17 | 0 | 17 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.3810 | 10 | 0 | 10 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 96.5625 | 100.0000 | 93.3535 | 69.9091 | 309 | 0 | 309 | 22 | 21 | 95.4545 | |
| jlack-gatk | INDEL | I16_PLUS | HG002compoundhet | homalt | 4.5113 | 100.0000 | 2.3077 | 65.0538 | 3 | 0 | 3 | 127 | 123 | 96.8504 | |
| jlack-gatk | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 71.8750 | 9 | 0 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 87.7193 | 100.0000 | 78.1250 | 91.6883 | 25 | 0 | 25 | 7 | 6 | 85.7143 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 91.4191 | 24 | 0 | 24 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.2222 | 100.0000 | 94.5946 | 84.2553 | 35 | 0 | 35 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.2089 | 89 | 0 | 89 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.2336 | 53 | 0 | 53 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 20 | 0 | 20 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 82.0225 | 16 | 0 | 16 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 28.5714 | 100.0000 | 16.6667 | 91.3043 | 1 | 0 | 1 | 5 | 4 | 80.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 79.3103 | 100.0000 | 65.7143 | 87.1324 | 23 | 0 | 23 | 12 | 11 | 91.6667 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.2745 | 100.0000 | 75.8621 | 86.5116 | 22 | 0 | 22 | 7 | 7 | 100.0000 | |