PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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7051-7100 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | ti | HG002compoundhet | het | 96.7284 | 93.7822 | 99.8656 | 37.2373 | 8914 | 591 | 8916 | 12 | 1 | 8.3333 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7097 | 93.6390 | 99.9886 | 31.7888 | 8700 | 591 | 8743 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7097 | 93.6390 | 99.9886 | 31.7888 | 8700 | 591 | 8743 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | * | het | 97.6225 | 99.3251 | 95.9773 | 54.9367 | 86983 | 591 | 87418 | 3664 | 3399 | 92.7675 | |
| jpowers-varprowl | SNP | ti | HG002compoundhet | het | 95.4233 | 93.7822 | 97.1228 | 46.8499 | 8914 | 591 | 9013 | 267 | 22 | 8.2397 | |
| jli-custom | SNP | ti | * | het | 99.9331 | 99.9539 | 99.9123 | 17.4772 | 1281300 | 591 | 1281266 | 1125 | 87 | 7.7333 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.5565 | 95.7135 | 99.4720 | 43.1314 | 13174 | 590 | 13375 | 71 | 70 | 98.5915 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.5878 | 96.0095 | 97.1732 | 53.9900 | 14195 | 590 | 14197 | 413 | 388 | 93.9467 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | * | 98.2432 | 96.6243 | 99.9172 | 34.4311 | 16888 | 590 | 16889 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | * | 88.5661 | 95.0964 | 82.8750 | 85.4707 | 11442 | 590 | 11300 | 2335 | 147 | 6.2955 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | homalt | 97.2353 | 95.0114 | 99.5658 | 80.8094 | 11237 | 590 | 11237 | 49 | 20 | 40.8163 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | het | 79.4811 | 73.6018 | 86.3811 | 92.1058 | 1645 | 590 | 1795 | 283 | 31 | 10.9541 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.5758 | 15.3515 | 27.0073 | 33.7097 | 107 | 590 | 111 | 300 | 272 | 90.6667 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 22.7618 | 14.1194 | 58.6792 | 46.6264 | 97 | 590 | 311 | 219 | 217 | 99.0868 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 54.1148 | 85.3960 | 39.6066 | 69.0608 | 3450 | 590 | 3443 | 5250 | 4800 | 91.4286 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.4915 | 90.6675 | 96.4971 | 60.4318 | 5732 | 590 | 5730 | 208 | 164 | 78.8462 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.4915 | 90.6675 | 96.4971 | 60.4318 | 5732 | 590 | 5730 | 208 | 164 | 78.8462 | |
| qzeng-custom | SNP | tv | map_l250_m2_e1 | het | 78.9288 | 69.9746 | 90.5109 | 96.1912 | 1375 | 590 | 1364 | 143 | 116 | 81.1189 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 86.6360 | 76.8019 | 99.3583 | 29.3091 | 1950 | 589 | 2013 | 13 | 11 | 84.6154 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.3493 | 98.1589 | 98.5404 | 55.2323 | 31403 | 589 | 31326 | 464 | 446 | 96.1207 | |
| ciseli-custom | INDEL | * | map_l150_m2_e1 | * | 65.3436 | 59.0688 | 73.1100 | 93.1469 | 850 | 589 | 851 | 313 | 195 | 62.3003 | |
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | het | 19.4609 | 11.4286 | 65.4867 | 81.3223 | 76 | 589 | 74 | 39 | 19 | 48.7179 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002compoundhet | * | 96.2411 | 93.4780 | 99.1726 | 30.6557 | 8442 | 589 | 8390 | 70 | 63 | 90.0000 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e0 | * | 97.6510 | 97.6471 | 97.6549 | 73.7409 | 24444 | 589 | 24444 | 587 | 140 | 23.8501 | |
| dgrover-gatk | INDEL | I1_5 | * | hetalt | 97.2805 | 94.7387 | 99.9625 | 62.4322 | 10606 | 589 | 10669 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 48.6672 | 32.4541 | 97.2509 | 55.2995 | 283 | 589 | 283 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_siren | * | 93.6644 | 92.0513 | 95.3350 | 81.9963 | 6821 | 589 | 6887 | 337 | 103 | 30.5638 | |
| asubramanian-gatk | SNP | ti | HG002compoundhet | * | 98.1691 | 96.6358 | 99.7519 | 35.8566 | 16890 | 588 | 16888 | 42 | 17 | 40.4762 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | homalt | 97.2134 | 94.9739 | 99.5609 | 80.8017 | 11111 | 588 | 11111 | 49 | 20 | 40.8163 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | homalt | 91.9496 | 85.0988 | 100.0000 | 74.0535 | 3358 | 588 | 3358 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | het | 97.5444 | 95.3569 | 99.8346 | 54.8630 | 12076 | 588 | 12074 | 20 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 97.2852 | 94.7392 | 99.9718 | 57.2014 | 10589 | 588 | 10650 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 54.7241 | 37.7119 | 99.6997 | 43.1741 | 356 | 588 | 332 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.5318 | 96.2754 | 54.4161 | 53.0143 | 15173 | 587 | 15255 | 12779 | 12436 | 97.3159 | |
| astatham-gatk | INDEL | I6_15 | HG002compoundhet | * | 94.7145 | 93.3113 | 96.1606 | 37.2227 | 8189 | 587 | 8190 | 327 | 325 | 99.3884 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.9002 | 94.3962 | 99.5408 | 32.4909 | 9888 | 587 | 9971 | 46 | 46 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | * | hetalt | 95.9844 | 92.8187 | 99.3737 | 29.7010 | 7587 | 587 | 7616 | 48 | 47 | 97.9167 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | het | 98.9017 | 98.0395 | 99.7791 | 50.4672 | 29355 | 587 | 29358 | 65 | 6 | 9.2308 | |
| hfeng-pmm3 | INDEL | I6_15 | * | hetalt | 96.4340 | 93.1353 | 99.9750 | 38.6184 | 7964 | 587 | 8004 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002compoundhet | hetalt | 96.4396 | 93.1240 | 100.0000 | 29.8754 | 7950 | 587 | 7990 | 0 | 0 | ||
| ckim-dragen | SNP | * | HG002complexvar | * | 99.9301 | 99.9223 | 99.9379 | 19.4552 | 753795 | 586 | 754278 | 469 | 236 | 50.3198 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.0436 | 96.7173 | 99.4069 | 53.0396 | 17265 | 586 | 17262 | 103 | 9 | 8.7379 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | het | 98.8584 | 98.0229 | 99.7083 | 70.3755 | 29054 | 586 | 29054 | 85 | 36 | 42.3529 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7796 | 97.9625 | 99.6105 | 70.5385 | 28127 | 585 | 28128 | 110 | 10 | 9.0909 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7796 | 97.9625 | 99.6105 | 70.5385 | 28127 | 585 | 28128 | 110 | 10 | 9.0909 | |
| hfeng-pmm1 | SNP | * | map_siren | het | 99.5907 | 99.3571 | 99.8255 | 53.5727 | 90406 | 585 | 90392 | 158 | 38 | 24.0506 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | * | 97.9668 | 98.7606 | 97.1856 | 77.0392 | 46617 | 585 | 46617 | 1350 | 276 | 20.4444 | |
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | * | 38.0148 | 23.5294 | 98.9011 | 99.0675 | 180 | 585 | 180 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.7100 | 20.4082 | 48.3974 | 46.2069 | 150 | 585 | 151 | 161 | 125 | 77.6398 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 24.2522 | 20.4082 | 29.8805 | 51.4507 | 150 | 585 | 150 | 352 | 340 | 96.5909 | |