PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
7001-7050 / 86044 show all
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
83.7592
72.2584
99.6141
35.3161
1555597154964
66.6667
gduggal-snapfbINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
69.0921
61.2589
79.2222
54.8419
9445971426374353
94.3850
gduggal-snapplatSNPtimap_l150_m0_e0het
90.2196
88.2872
92.2384
90.0002
45005974504379218
57.5198
hfeng-pmm2SNPtiHG002compoundhet*
98.2110
96.5843
99.8935
34.1246
1688159716883187
38.8889
hfeng-pmm3INDELD1_5*het
99.5975
99.3183
99.8783
55.2507
869775978698210653
50.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50*
92.3491
87.7265
97.4860
57.2867
4260596434311272
64.2857
gduggal-snapfbSNPtimap_l100_m2_e0het
97.3939
98.0537
96.7430
68.0809
30026596300301011436
43.1256
gduggal-snapvardSNP*lowcmp_SimpleRepeat_diTR_11to50*
87.6921
93.8506
82.2921
78.6557
909659689971936140
7.2314
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
82.7375
72.6354
96.1036
54.2365
15825963675149111
74.4966
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4888
93.5852
99.5783
30.8129
869559687383737
100.0000
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4888
93.5852
99.5783
30.8129
869559687383737
100.0000
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.0481
94.6421
99.5798
42.9211
10510595106634544
97.7778
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.5463
98.3740
98.7193
52.5147
3599759535921466435
93.3476
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
86.8145
81.4642
92.9171
53.5981
26155952768211211
100.0000
gduggal-snapplatSNPtvmap_l150_m2_e0homalt
92.1411
85.4274
100.0000
76.0916
3488595348800
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
47.3186
31.7661
92.7083
19.3277
2775958976
85.7143
gduggal-snapfbSNPtimap_l100_m1_e0het
97.3515
98.0162
96.6958
65.8783
29348594293521003436
43.4696
gduggal-snapfbSNPtimap_sirenhomalt
99.1394
98.4334
99.8555
57.8682
37322594373225429
53.7037
jpowers-varprowlSNPtvmap_l100_m2_e1*
97.6564
97.6506
97.6622
73.7732
2468959424689591141
23.8579
rpoplin-dv42INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
93.9710
90.6042
97.5975
61.3424
57285945728141133
94.3262
rpoplin-dv42INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.9710
90.6042
97.5975
61.3424
57285945728141133
94.3262
ckim-isaacINDEL*map_l100_m1_e0het
83.9386
73.4228
97.9701
85.4069
164159416413414
41.1765
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0556
96.6386
97.4762
58.8481
1707759417071442432
97.7376
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0556
96.6386
97.4762
58.8481
1707759417071442432
97.7376
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
75.7026
69.8630
82.6075
47.3461
13775943073647636
98.2998
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
75.7026
69.8630
82.6075
47.3461
13775943073647636
98.2998
asubramanian-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6773
98.9323
98.4237
61.2579
550375945507288234
3.8549
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
4.6990
2.6273
22.2222
79.1506
16593248448
57.1429
jlack-gatkSNPtv**
99.5956
99.9388
99.2547
27.4223
9690975939690087276194
2.6663
ltrigg-rtg2SNPtimap_l100_m2_e0het
98.9081
98.0635
99.7675
53.0390
3002959330032706
8.5714
ltrigg-rtg2SNPtimap_l100_m2_e1het
98.9153
98.0846
99.7602
53.1134
3036759330370736
8.2192
gduggal-bwafbINDEL*HG002compoundhethet
91.2904
85.5154
97.9020
36.8528
350159330518654528
80.7339
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.0288
97.3348
98.7327
54.0492
2165759321658278267
96.0432
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4901
93.6175
99.5447
31.6449
869859387454040
100.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4901
93.6175
99.5447
31.6449
869859387454040
100.0000
cchapple-customINDELD1_5*het
99.5112
99.3229
99.7003
54.7900
8698159397146292149
51.0274
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3055
99.0812
99.5308
74.4619
6383959263852301259
86.0465
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
95.2271
91.4028
99.3853
26.0145
629459263063935
89.7436
hfeng-pmm2INDELI1_5*hetalt
97.2753
94.7119
99.9812
62.6532
106035921066222
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9634
98.0991
99.8431
67.2451
30551592305514817
35.4167
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9634
98.0991
99.8431
67.2451
30551592305514817
35.4167
ltrigg-rtg1SNP*HG002compoundhet*
98.7318
97.7074
99.7779
38.3623
25230592251605617
30.3571
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.7392
98.1151
99.3713
57.1912
3081659230820195176
90.2564
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.7392
98.1151
99.3713
57.1912
3081659230820195176
90.2564
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
86.6457
91.9827
81.8942
39.7431
6792592676214951459
97.5920
gduggal-bwavardSNP*map_l125_m1_e0het
94.0558
97.9149
90.4894
82.0185
27800592274782888162
5.6094
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
82.3435
83.6876
81.0419
74.6270
30325913018706302
42.7762
hfeng-pmm2INDELI1_5HG002compoundhethetalt
97.2799
94.7124
99.9906
57.4359
105865911064311
100.0000
hfeng-pmm1INDELI6_15*hetalt
96.4031
93.0885
99.9625
39.0201
7960591800033
100.0000
hfeng-pmm1INDELI6_15HG002compoundhethetalt
96.4145
93.0772
100.0000
29.8859
7946591798600