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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
6951-7000 / 86044 show all
ciseli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
93.2663
94.0755
92.4709
53.9758
95756039543777701
90.2188
dgrover-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8320
96.0887
99.6397
60.4528
14814603149325453
98.1481
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
38.3227
27.8708
61.3176
55.5889
233603363229214
93.4498
gduggal-bwafbINDELD16_PLUS*het
87.0129
80.9433
94.0664
49.5246
25576023995252244
96.8254
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.2868
95.8815
98.7340
45.9174
1401560239539507431
85.0099
jpowers-varprowlSNP*map_l125_m0_e0het
95.4272
95.2464
95.6088
82.3444
1206260212062554169
30.5054
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
76.7383
75.0311
78.5249
51.9191
18096021810495467
94.3434
hfeng-pmm3INDELD1_5*hetalt
96.9633
94.1240
99.9794
61.2573
9643602968620
0.0000
hfeng-pmm3INDELD1_5HG002compoundhethetalt
96.9544
94.1073
99.9792
56.3965
9614602961320
0.0000
ciseli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
93.4760
95.9242
91.1498
55.7793
14168602141511374617
44.9054
ckim-dragenINDELD6_15**
97.9198
97.6928
98.1478
56.3201
2549060225488481433
90.0208
ckim-isaacINDEL*map_l100_m2_e0het
84.2881
73.9489
97.9885
86.2255
170660117053515
42.8571
gduggal-bwaplatINDELD16_PLUSHG002complexvar*
76.5914
63.4206
96.6667
72.4490
104260110443623
63.8889
mlin-fermikitINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
73.6558
85.1238
64.9109
67.0798
3439601324117521680
95.8904
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
43.8001
29.2941
86.7647
51.6014
2496012363627
75.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.2962
90.1200
96.7045
61.7457
54826015370183171
93.4426
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.0609
90.1200
98.3621
57.5242
548260155259266
71.7391
dgrover-gatkINDELI1_5HG002compoundhet*
96.3058
95.1360
97.5048
66.8717
1175560111762301300
99.6678
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
82.7602
77.8800
88.2929
83.1252
21166012255299150
50.1672
mlin-fermikitINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
74.6510
71.8045
77.7324
73.3424
15286001522436398
91.2844
mlin-fermikitINDELD1_5map_l100_m1_e0*
76.7469
67.5325
88.8730
76.4647
12486001246156136
87.1795
ciseli-customINDELI1_5map_sirenhomalt
62.7683
50.4950
82.9235
77.4631
61260060712597
77.6000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.8801
90.1364
95.7959
52.1555
54836007793342302
88.3041
asubramanian-gatkINDEL**homalt
99.2686
99.5207
99.0178
58.9491
1245726001245991236954
77.1845
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.6607
91.0166
98.6088
31.6968
607960059548472
85.7143
ltrigg-rtg1SNP*map_l100_m0_e0het
98.4261
97.1705
99.7145
55.4883
2060560020610598
13.5593
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
90.7313
91.0661
90.3989
49.5222
61166006685710208
29.2958
gduggal-snapfbINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
57.1877
67.4267
49.6483
70.3545
124260012001217171
14.0509
gduggal-snapvardINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
14.9034
8.1164
90.9910
51.3158
53600101109
90.0000
gduggal-snapplatSNPtvmap_l100_m0_e0het
92.3125
91.6921
92.9413
85.1008
66226006623503271
53.8767
hfeng-pmm2INDELI6_15HG002compoundhet*
95.0368
93.1632
96.9873
36.8937
81766008177254252
99.2126
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4715
93.5529
99.5781
31.7934
869259987333736
97.2973
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4715
93.5529
99.5781
31.7934
869259987333736
97.2973
qzeng-customSNP*map_l250_m0_e0het
70.2798
60.2258
84.3633
98.3296
907599901167127
76.0479
ckim-isaacSNPtvmap_l250_m2_e0homalt
53.0196
36.0726
100.0000
87.3075
33859933800
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
91.6132
84.5897
99.9088
64.9616
3288599328530
0.0000
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
16.5137
9.1047
88.6667
60.4222
605991331717
100.0000
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
16.5137
9.1047
88.6667
60.4222
605991331717
100.0000
gduggal-bwafbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
93.1275
89.5499
97.0028
61.5094
5133599346310792
85.9813
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8254
98.0798
97.5723
79.1147
3054559830586761104
13.6662
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8254
98.0798
97.5723
79.1147
3054559830586761104
13.6662
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.3816
98.0381
96.7339
73.7893
2988259829440994753
75.7545
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.3816
98.0381
96.7339
73.7893
2988259829440994753
75.7545
gduggal-snapplatSNPtvmap_l150_m2_e1homalt
92.2034
85.5346
100.0000
76.0404
3536598353500
ghariani-varprowlINDELI6_15*het
73.9358
94.0397
60.9136
54.3281
9435598949460926035
99.0643
gduggal-snapfbSNPtimap_l100_m2_e1het
97.4111
98.0685
96.7625
68.1401
30362598303661016436
42.9134
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.5384
98.0960
98.9848
61.0949
3081059830810316292
92.4051
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.5384
98.0960
98.9848
61.0949
3081059830810316292
92.4051
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.4121
97.3169
99.5323
46.2505
216535972170910262
60.7843
gduggal-bwaplatINDELI6_15HG002complexvarhet
84.5433
74.6497
97.4600
66.9103
175859717654616
34.7826