PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
6801-6850 / 86044 show all
hfeng-pmm3SNPtvHG002complexvarhet
99.7826
99.5854
99.9807
20.9857
150106625150027296
20.6897
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.5965
95.7727
99.4912
45.8166
14160625140787263
87.5000
jli-customSNP*map_siren*
99.6458
99.5726
99.7192
52.4710
145603625145591410101
24.6341
astatham-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.7545
95.9460
99.6325
60.1730
14792625149105554
98.1818
astatham-gatkINDELI1_5HG002compoundhet*
96.1407
94.9417
97.3704
66.4075
1173162511738317315
99.3691
cchapple-customINDELI1_5HG002compoundhethetalt
0.0000
94.4082
0.0000
0.0000
10552625000
gduggal-snapfbSNP*map_l100_m0_e0het
95.9914
97.0526
94.9532
68.8933
20580625205831094492
44.9726
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
1.1076
0.0000
0.0000
7625000
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6411
96.9703
98.3214
47.5930
1997262419973341336
98.5337
asubramanian-gatkINDELD1_5*hetalt
96.4051
93.9092
99.0373
64.2371
962162496709488
93.6170
jlack-gatkSNPtimap_siren*
98.3403
99.3782
97.3238
62.0115
99731624997162742240
8.7527
gduggal-bwaplatINDEL*map_l100_m1_e0het
83.2773
72.0805
98.5924
92.9796
16116241611237
30.4348
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
46.8416
83.8718
32.4948
49.6168
3245624326867896766
99.6612
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
64.5683
53.9483
80.3942
65.4232
731624775189165
87.3016
qzeng-customINDELD1_5HG002complexvar*
98.5796
98.0926
99.0713
54.7462
3209162432325303168
55.4455
qzeng-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.6704
98.1255
97.2195
71.9856
32613623417831195869
72.7197
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.7010
96.5880
98.8399
43.3164
1763662317637207204
98.5507
gduggal-snapplatINDEL*map_l100_m2_e1het
79.3653
73.4102
86.3720
92.6210
1720623187629632
10.8108
hfeng-pmm3INDELI1_5*hetalt
97.1290
94.4350
99.9812
61.2138
105726231063222
100.0000
egarrison-hhgaINDELI16_PLUS**
92.9799
90.2305
95.9020
62.0328
57546235757246165
67.0732
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
47.3773
0.0000
0.0000
560622000
cchapple-customSNP*map_l100_m0_e0het
95.9513
97.0667
94.8612
75.7604
20583622206011116255
22.8495
ckim-vqsrINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.7235
93.8350
95.6289
69.0222
94526219298425390
91.7647
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
71.7619
59.4118
90.5941
73.3930
9096219159549
51.5789
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
71.7619
59.4118
90.5941
73.3930
9096219159549
51.5789
anovak-vgINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
11.7218
6.7568
44.2029
61.9835
45621617710
12.9870
anovak-vgINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
11.7218
6.7568
44.2029
61.9835
45621617710
12.9870
hfeng-pmm3INDELI1_5HG002compoundhethetalt
97.1381
94.4439
99.9906
55.8738
105566211061411
100.0000
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
86.4817
76.5507
99.3735
30.6252
202462020621311
84.6154
gduggal-bwaplatINDEL*map_l150_m2_e0*
71.6038
55.9659
99.3695
96.1005
78862078851
20.0000
gduggal-bwavardSNP*map_l125_m2_e1het
94.2043
97.9082
90.7704
83.1773
29020620286782916165
5.6584
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
42.4890
35.9504
51.9347
63.3123
348620604559103
18.4258
asubramanian-gatkINDELD1_5HG002compoundhethetalt
96.4959
93.9311
99.2046
59.5968
959662096047771
92.2078
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.8096
94.2598
73.8399
86.2952
10181620100093546141
3.9763
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
92.0469
94.0521
90.1255
39.8201
9788619976610701036
96.8224
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
85.0606
95.7652
76.5084
52.6827
139986191534347114543
96.4339
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
44.9406
29.0138
99.6337
37.6712
25361927211
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.5136
96.5980
88.7606
66.4930
175486181752422192149
96.8454
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.5136
96.5980
88.7606
66.4930
175486181752422192149
96.8454
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.5598
93.3484
100.0000
31.4834
8673618871600
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.5598
93.3484
100.0000
31.4834
8673618871600
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
11.3343
0.0000
0.0000
79618000
gduggal-bwavardSNP*map_l125_m2_e0het
94.1644
97.8921
90.7102
83.1354
28700618283662905164
5.6454
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.7242
97.5630
97.8859
54.6627
2474161824632532424
79.6992
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
58.1841
43.2904
88.7006
71.9789
4716174716058
96.6667
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7400
96.1684
99.3638
68.4150
15461616154629969
69.6970
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7400
96.1684
99.3638
68.4150
15461616154629969
69.6970
hfeng-pmm1INDELI1_5*hetalt
97.1621
94.4975
99.9812
62.7564
105796161063722
100.0000
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
2.5316
0.0000
0.0000
16616000
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0336
96.1684
97.9144
65.7408
1546161615446329175
53.1915