PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
6701-6750 / 86044 show all
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
45.8754
35.9281
63.4398
55.1086
360642616355312
87.8873
qzeng-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
88.2413
79.4231
99.2621
38.3627
247864230942317
73.9130
ckim-vqsrINDELD1_5HG002compoundhethetalt
96.5656
93.7157
99.5943
58.2787
957464295743939
100.0000
jlack-gatkSNP*map_l100_m1_e0*
97.0238
99.1147
95.0193
74.0812
71762641717513761290
7.7107
ltrigg-rtg1INDELD1_5HG002compoundhet*
96.8842
94.7609
99.1047
63.0486
115946411162310578
74.2857
cchapple-customSNPtimap_sirenhomalt
99.1409
98.3094
99.9866
47.3567
372756413725855
100.0000
ckim-gatkINDELD1_5HG002compoundhethetalt
96.5709
93.7255
99.5943
58.2762
957564195753939
100.0000
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
19.1677
0.0000
0.0000
152641000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
38.9035
36.0279
42.2780
67.7158
361641438598312
52.1739
raldana-dualsentieonINDELD1_5*het
99.5220
99.2680
99.7773
56.3227
8693364186937194136
70.1031
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
73.0196
90.4177
61.2365
38.8818
60396401530396878838
91.2357
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
86.4138
96.3627
78.3270
66.2442
1692963917004470598
2.0829
asubramanian-gatkSNPtvmap_l250_m0_e0*
28.2828
16.4706
100.0000
99.1823
12663912600
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7498
97.1281
98.3795
53.6051
2161163921612356342
96.0674
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
83.5360
76.8142
91.5470
43.3092
21176392296212212
100.0000
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
77.8141
67.6306
91.6078
59.9900
13336382205202194
96.0396
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
77.8141
67.6306
91.6078
59.9900
13336382205202194
96.0396
gduggal-bwaplatINDEL*map_l100_m2_e0het
83.4500
72.3450
98.5824
93.3707
16696381669248
33.3333
gduggal-bwavardINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.4680
0.0000
0.0000
3638000
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.6931
93.6813
99.9050
54.1997
9459638946897
77.7778
hfeng-pmm1INDELD1_5*het
99.5580
99.2715
99.8461
55.4481
869366388694013451
38.0597
hfeng-pmm1INDELD6_15HG002compoundhet*
95.4940
92.9354
98.1974
32.8011
83936388389154150
97.4026
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
11.5234
8.4648
18.0428
48.1775
5963859268265
98.8806
bgallagher-sentieonINDELD1_5HG002compoundhet*
95.8155
94.7855
96.8682
66.0428
1159763811599375373
99.4667
rpoplin-dv42INDELD1_5HG002compoundhet*
95.7563
94.7855
96.7473
62.2778
1159763811600390380
97.4359
gduggal-bwafbSNP*map_l100_m1_e0*
99.0258
99.1202
98.9317
67.1588
7176663771768775161
20.7742
ciseli-customSNP*map_l250_m0_e0het
62.5646
57.7025
68.3215
96.1752
86963786740213
3.2338
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
94.8171
94.6358
94.9992
46.8433
1123863711246592535
90.3716
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.8827
94.2729
99.6411
27.0328
10469636105513838
100.0000
ciseli-customINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.7800
0.0000
0.0000
5636000
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
7.2121
4.3609
20.8333
84.0266
296364015295
62.5000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.5102
97.4083
99.6374
38.9351
23904636239068770
80.4598
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.4489
97.9134
98.9903
69.4877
2984463629412300222
74.0000
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.4489
97.9134
98.9903
69.4877
2984463629412300222
74.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.9301
95.6489
98.2460
63.4208
1398163613611243222
91.3580
jpowers-varprowlINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.7800
0.0000
0.0000
5636000
qzeng-customINDEL*map_sirenhet
88.2436
85.8917
90.7279
86.0479
3872636432544293
21.0407
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6327
96.9169
98.3591
48.8223
1996163519961333328
98.4985
ciseli-customSNPtimap_l125_m0_e0homalt
86.4046
85.8606
86.9555
67.4980
38566353853578472
81.6609
gduggal-bwavardSNPtvmap_sirenhet
95.7305
97.7804
93.7647
72.5806
27974635278651853145
7.8252
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
12.5633
8.8953
21.3793
49.9136
6263562228224
98.2456
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
12.6208
7.7147
34.6667
87.4161
53634529877
78.5714
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
92.5569
94.9365
90.2936
47.5778
118876341125612101034
85.4545
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.8922
94.2909
99.6412
27.0291
10471634105533838
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.8012
88.8400
99.3492
39.7743
504763450383325
75.7576
jpowers-varprowlINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.7981
89.6100
78.6942
72.7931
5468634549614881452
97.5806
ckim-dragenINDELD1_5HG002compoundhet*
95.8880
94.8263
96.9738
65.9095
1160263311600362359
99.1713
gduggal-snapvardSNPtimap_l125_m1_e0het
91.5438
96.5345
87.0437
81.1544
17633633175012605206
7.9079
mlin-fermikitSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8660
97.7360
97.9964
54.8200
2732663327341559392
70.1252
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
87.7796
92.4607
83.5496
48.0211
7763633772515211474
96.9099