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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
6551-6600 / 86044 show all
gduggal-bwavardSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.4880
97.6215
97.3548
60.2420
2729466527125737204
27.6798
gduggal-snapplatINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
0665000
gduggal-snapplatINDELI16_PLUSHG002complexvarhet
0.0000
0.0000
0.0000
0665000
gduggal-snapfbINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
0665000
gduggal-snapfbSNP*map_l150_m0_e0*
94.8356
94.4731
95.2010
82.0124
1136766511367573270
47.1204
ghariani-varprowlSNPtimap_siren*
99.0024
99.3374
98.6698
59.6146
99690665996931344247
18.3780
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
16.1412
0.0000
0.0000
128665000
mlin-fermikitINDEL*map_l125_m2_e0het
67.2880
52.1927
94.6684
82.7849
7266657284117
41.4634
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.6682
96.2747
75.5590
61.4479
17186665174025629124
2.2029
ltrigg-rtg1INDELI1_5*hetalt
96.8345
94.0598
99.7778
71.7595
10530665107762424
100.0000
ltrigg-rtg1INDELI1_5HG002compoundhethetalt
96.8755
94.0503
99.8757
63.2515
10512665104461313
100.0000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
50.1118
85.0427
35.5215
51.6283
3781665380469056879
99.6235
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.0000
0.3003
0.0000
0.0000
2664000
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.3003
0.0000
0.0000
2664000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
63.6157
46.9649
98.5586
37.4295
58866454786
75.0000
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
88.6180
82.8379
95.2651
48.0962
32056642857142132
92.9577
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.4107
85.7327
97.8942
35.5826
398466318133939
100.0000
gduggal-snapfbINDELI16_PLUSHG002complexvarhet
0.0000
0.3008
0.0000
0.0000
2663000
gduggal-snapvardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.0062
96.7177
99.3296
54.4844
195366631926113058
44.6154
gduggal-snapfbINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
61.1050
49.8107
79.0230
48.0597
658663550146144
98.6301
gduggal-snapvardINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
26.7429
20.8134
37.3970
59.0695
174662227380217
57.1053
gduggal-snapplatSNPtvmap_l150_m0_e0*
88.3530
84.1399
93.0103
89.4841
35126623513264134
50.7576
ltrigg-rtg1SNPtimap_sirenhet
99.2961
98.9388
99.6561
47.8678
617196626171821310
4.6948
ckim-vqsrINDELI6_15*hetalt
95.9384
92.2582
99.9244
35.7201
7889662793065
83.3333
ckim-vqsrINDELI6_15HG002compoundhethetalt
95.9547
92.2455
99.9747
28.2465
7875662791622
100.0000
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
86.8178
81.4097
92.9955
56.2615
28996622881217142
65.4378
ciseli-customINDELI6_15HG002complexvarhomalt
51.5500
45.4695
59.5078
51.7279
552662532362333
91.9890
ckim-gatkINDELI6_15HG002compoundhet*
94.2778
92.4567
96.1721
36.2689
81146628115323321
99.3808
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.4986
96.2849
98.7434
52.0928
1715766243140549461
83.9709
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.7995
97.9339
99.6807
49.2515
313316613152810186
85.1485
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
90.2411
88.1901
92.3898
58.0809
49366614589378364
96.2963
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
86.1916
81.4378
91.5347
58.1069
29006613006278275
98.9209
hfeng-pmm3SNPtvHG002complexvar*
99.8576
99.7315
99.9841
21.7544
2454916612454043915
38.4615
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
9.9949
5.3085
85.2941
78.6164
3766058109
90.0000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
48.7196
38.0282
67.7741
83.0040
40566040819418
9.2784
gduggal-snapplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
0.0000
0659000
gduggal-snapplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
0659000
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
0.0000
0659000
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
0659000
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
0.0000
0659000
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
0659000
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
42.3946
28.6024
81.8750
58.3875
2646592625851
87.9310
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
0.0000
0659000
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
0659000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
85.3420
79.4704
92.1504
48.6116
25516592524215182
84.6512
ndellapenna-hhgaSNP*map_l125_m2_e0*
99.1850
98.5896
99.7877
69.4898
46064659460649849
50.0000
jpowers-varprowlINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
30.5395
21.2919
53.9877
73.8991
178658176150150
100.0000
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.9540
95.2267
96.6924
48.5132
1312765813126449442
98.4410
ckim-isaacSNPtimap_l250_m0_e0*
68.2974
51.9708
99.5804
93.7826
71265871231
33.3333
gduggal-snapvardSNP*map_l125_m1_e0homalt
97.9102
96.1077
99.7817
66.1808
16247658159993527
77.1429