PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6401-6450 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 22.9356 | 12.9887 | 97.9381 | 34.8993 | 103 | 690 | 95 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | homalt | 97.7543 | 95.9184 | 99.6620 | 74.9969 | 16215 | 690 | 16216 | 55 | 21 | 38.1818 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.1478 | 0.0000 | 0.0000 | 8 | 689 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 53.1638 | 65.0431 | 44.9536 | 49.5979 | 1282 | 689 | 3296 | 4036 | 3328 | 82.4579 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 53.1638 | 65.0431 | 44.9536 | 49.5979 | 1282 | 689 | 3296 | 4036 | 3328 | 82.4579 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 67.4784 | 54.4914 | 88.5928 | 95.0381 | 825 | 689 | 831 | 107 | 16 | 14.9533 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.1692 | 86.5403 | 83.8409 | 73.2417 | 4430 | 689 | 4405 | 849 | 604 | 71.1425 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.0148 | 88.2142 | 98.3681 | 47.4010 | 5157 | 689 | 11935 | 198 | 162 | 81.8182 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.0148 | 88.2142 | 98.3681 | 47.4010 | 5157 | 689 | 11935 | 198 | 162 | 81.8182 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 81.5800 | 75.0000 | 89.4256 | 42.8500 | 2067 | 689 | 2055 | 243 | 230 | 94.6502 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | * | 97.3682 | 96.6752 | 98.0713 | 80.1400 | 20034 | 689 | 20034 | 394 | 141 | 35.7868 | |
| gduggal-bwavard | SNP | * | map_l150_m1_e0 | * | 94.8478 | 97.7523 | 92.1110 | 81.9172 | 29921 | 688 | 29540 | 2530 | 139 | 5.4941 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | homalt | 97.6327 | 97.4544 | 97.8116 | 53.5251 | 26339 | 688 | 26326 | 589 | 564 | 95.7555 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.5348 | 93.8046 | 99.4286 | 27.8282 | 10417 | 688 | 10441 | 60 | 59 | 98.3333 | |
| gduggal-snapvard | SNP | tv | HG002compoundhet | het | 75.6689 | 85.2771 | 68.0065 | 62.2530 | 3985 | 688 | 4585 | 2157 | 1046 | 48.4933 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.2261 | 96.1390 | 98.3380 | 67.3449 | 17131 | 688 | 16745 | 283 | 223 | 78.7986 | |
| gduggal-snapplat | INDEL | D6_15 | HG002compoundhet | het | 18.8426 | 19.6262 | 18.1193 | 66.4873 | 168 | 688 | 79 | 357 | 161 | 45.0980 | |
| cchapple-custom | SNP | * | map_l100_m2_e0 | homalt | 98.7307 | 97.5003 | 99.9925 | 58.6733 | 26835 | 688 | 26824 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0945 | 98.9337 | 99.2558 | 72.1244 | 63744 | 687 | 63755 | 478 | 442 | 92.4686 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1133 | 95.7268 | 98.5406 | 67.8499 | 15390 | 687 | 15395 | 228 | 206 | 90.3509 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1133 | 95.7268 | 98.5406 | 67.8499 | 15390 | 687 | 15395 | 228 | 206 | 90.3509 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2241 | 98.9337 | 99.5161 | 74.5848 | 63744 | 687 | 63757 | 310 | 273 | 88.0645 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 59.7633 | 44.9960 | 88.9590 | 75.7274 | 562 | 687 | 564 | 70 | 67 | 95.7143 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 59.7633 | 44.9960 | 88.9590 | 75.7274 | 562 | 687 | 564 | 70 | 67 | 95.7143 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | homalt | 42.1230 | 26.6809 | 100.0000 | 96.2620 | 250 | 687 | 250 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 687 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 687 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 59.8657 | 45.0761 | 89.0995 | 75.7842 | 563 | 686 | 564 | 69 | 66 | 95.6522 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 59.8657 | 45.0761 | 89.0995 | 75.7842 | 563 | 686 | 564 | 69 | 66 | 95.6522 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.2898 | 0.1456 | 32.5714 | 65.9533 | 1 | 686 | 57 | 118 | 47 | 39.8305 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 36.4602 | 27.1762 | 55.3790 | 36.8827 | 256 | 686 | 1359 | 1095 | 912 | 83.2877 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.2978 | 89.3146 | 95.4870 | 71.2322 | 5734 | 686 | 6813 | 322 | 214 | 66.4596 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.2978 | 89.3146 | 95.4870 | 71.2322 | 5734 | 686 | 6813 | 322 | 214 | 66.4596 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.4780 | 96.5462 | 96.4099 | 50.7305 | 19176 | 686 | 28090 | 1046 | 443 | 42.3518 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | homalt | 97.9034 | 96.0929 | 99.7834 | 68.5949 | 16847 | 685 | 16588 | 36 | 28 | 77.7778 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.8642 | 95.2989 | 94.4335 | 80.6105 | 13886 | 685 | 13911 | 820 | 85 | 10.3659 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 94.8642 | 95.2989 | 94.4335 | 80.6105 | 13886 | 685 | 13911 | 820 | 85 | 10.3659 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.1406 | 89.3302 | 90.9658 | 70.1878 | 5735 | 685 | 5689 | 565 | 335 | 59.2920 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 90.1406 | 89.3302 | 90.9658 | 70.1878 | 5735 | 685 | 5689 | 565 | 335 | 59.2920 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | * | 97.3631 | 96.6654 | 98.0710 | 80.0739 | 19828 | 684 | 19828 | 390 | 140 | 35.8974 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 65.9412 | 85.6091 | 53.6220 | 35.4284 | 4069 | 684 | 4049 | 3502 | 3279 | 93.6322 | |
| cchapple-custom | SNP | * | map_l100_m1_e0 | homalt | 98.7154 | 97.4707 | 99.9924 | 55.8509 | 26320 | 683 | 26310 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l150_m1_e0 | homalt | 85.3488 | 82.6913 | 88.1828 | 71.9082 | 3263 | 683 | 3261 | 437 | 339 | 77.5744 | |
| hfeng-pmm1 | SNP | tv | HG002complexvar | het | 99.7636 | 99.5469 | 99.9813 | 20.8221 | 150048 | 683 | 149969 | 28 | 9 | 32.1429 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | homalt | 72.8401 | 57.4984 | 99.3478 | 88.5158 | 924 | 683 | 914 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.8228 | 93.8496 | 99.9905 | 28.4361 | 10422 | 683 | 10501 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 65.4441 | 60.5202 | 71.2401 | 29.6193 | 1047 | 683 | 1080 | 436 | 388 | 88.9908 | |
| anovak-vg | SNP | tv | map_l150_m2_e1 | het | 76.1119 | 90.7050 | 65.5638 | 81.6339 | 6665 | 683 | 6658 | 3497 | 823 | 23.5345 | |
| jmaeng-gatk | INDEL | D1_5 | * | hetalt | 96.3487 | 93.3431 | 99.5544 | 62.8913 | 9563 | 682 | 9606 | 43 | 43 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_siren | het | 99.3687 | 98.9067 | 99.8350 | 52.2716 | 61700 | 682 | 61701 | 102 | 39 | 38.2353 | |