PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
6251-6300 / 86044 show all
gduggal-bwafbINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
51.9110
37.2480
85.6132
63.2900
4257163636161
100.0000
rpoplin-dv42INDELI1_5HG002compoundhethetalt
96.6553
93.5940
99.9237
57.4617
104617161047688
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
49.2494
39.3734
65.7385
28.0488
465716543283280
98.9399
gduggal-snapfbSNP*map_l125_m2_e0het
96.4331
97.5578
95.3341
73.4403
28602716286051400602
43.0000
gduggal-snapfbSNP*map_l125_m2_e1het
96.4602
97.5843
95.3616
73.5220
28924716289271407602
42.7861
jli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.6166
98.0433
99.1967
49.3156
3587671635813290255
87.9310
jmaeng-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0763
92.8919
95.2913
68.9761
93577169208455419
92.0879
qzeng-customSNPtimap_l250_m2_e0homalt
73.9407
59.0623
98.8395
89.1089
103371610221211
91.6667
mlin-fermikitINDELD16_PLUSHG002compoundhet*
72.6643
69.4575
76.1816
36.8312
16267151628509505
99.2141
qzeng-customINDELI16_PLUSHG002compoundhet*
72.9335
66.6356
80.5461
47.8493
14287151416342260
76.0234
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
47.0909
41.9643
53.6443
57.0892
517715552477405
84.9057
ltrigg-rtg1SNP*map_l125_m2_e1*
99.1279
98.4852
99.7790
64.7783
464877154649510328
27.1845
jmaeng-gatkSNPtimap_l250_m0_e0*
64.0900
47.8102
97.1810
98.0371
655715655192
10.5263
gduggal-snapfbSNP*map_l125_m1_e0het
96.3552
97.4817
95.2545
71.3326
27677715276801379599
43.4373
gduggal-snapplatSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
93.7369
88.2556
99.9442
59.1703
5373715537130
0.0000
gduggal-snapplatSNPtvmap_l125_m2_e0het
93.2998
93.1527
93.4473
85.9522
97277159726682352
51.6129
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.5563
0.2789
100.0000
85.7143
2715200
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.4780
89.9466
99.4903
27.1930
639771564413328
84.8485
hfeng-pmm2INDEL*HG002compoundhethet
86.3875
82.5598
90.5872
78.6150
33807143147327317
96.9419
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9367
98.4377
99.4408
75.9589
449887144498825334
13.4387
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9367
98.4377
99.4408
75.9589
449887144498825334
13.4387
gduggal-bwavardSNP*map_l150_m2_e0*
94.9737
97.7584
92.3433
83.0785
31138714307422549141
5.5316
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.8994
96.0896
99.7786
37.7218
17545714175773937
94.8718
ltrigg-rtg1SNP*map_l125_m2_e0*
99.1232
98.4718
99.7831
64.7024
460097144601110028
28.0000
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
89.6870
88.2788
91.1408
63.5606
53707135257511485
94.9119
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9790
97.7713
98.1875
54.9936
3127971331203576562
97.5694
ckim-gatkSNPtimap_l250_m0_e0*
64.2229
47.9562
97.1893
97.9938
657713657192
10.5263
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
83.3027
71.9181
98.9696
44.4076
182671318251917
89.4737
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_11to50het
77.5375
77.3507
77.7253
87.2862
2435713246770754
7.6379
ghariani-varprowlSNP*map_l100_m2_e1*
98.3564
99.0460
97.6764
72.0101
74024713740271761324
18.3986
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
18.2339
0.0000
0.0000
159713000
gduggal-snapplatINDELI1_5map_siren*
81.2847
76.3062
86.9582
90.3597
2293712230734622
6.3584
ltrigg-rtg1SNP*map_l125_m1_e0*
99.1092
98.4292
99.7987
62.1857
44615712446169028
31.1111
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2310
94.8350
97.6687
49.0598
1307371213071312308
98.7179
jmaeng-gatkINDELD1_5HG002compoundhet*
95.7461
94.1888
97.3557
66.4684
1152471111524313309
98.7220
mlin-fermikitINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
57.4257
40.5021
98.6434
49.1124
48471150976
85.7143
anovak-vgSNP*map_l250_m2_e1het
71.9604
86.4932
61.6087
92.1600
455371145192816645
22.9048
mlin-fermikitINDELD1_5*homalt
97.9967
98.5488
97.4507
61.3393
482167104812712591234
98.0143
ndellapenna-hhgaINDELI6_15*hetalt
95.2209
91.6969
99.0267
38.6839
784171078347770
90.9091
ndellapenna-hhgaINDELI6_15HG002compoundhethetalt
95.3870
91.6833
99.4026
27.8852
782771078204742
89.3617
ghariani-varprowlSNP*map_l100_m2_e0*
98.3520
99.0401
97.6734
71.9819
73254710732571745322
18.4527
gduggal-snapplatSNPtvmap_l125_m1_e0het
93.1767
92.9883
93.3657
84.9692
94167109415669344
51.4200
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.0097
98.4465
99.5795
70.5535
449927104499319010
5.2632
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.0097
98.4465
99.5795
70.5535
449927104499319010
5.2632
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2751
93.2220
99.5351
28.3303
976571098484646
100.0000
ckim-vqsrSNPtvmap_l250_m1_e0homalt
29.3121
17.1729
100.0000
97.3637
14770914700
anovak-vgSNPtimap_l150_m0_e0homalt
84.9295
74.3209
99.0709
76.2265
205270920261918
94.7368
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
88.1535
79.4790
98.9534
72.5834
274670927422925
86.2069
gduggal-bwavardSNP*map_l100_m1_e0homalt
98.6152
97.3744
99.8881
60.4751
26294709258782923
79.3103
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
18.9437
10.5927
89.5161
64.6724
84709111139
69.2308