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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
6201-6250 / 86044 show all
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
37.1836
23.0932
95.3795
55.7018
2187262891414
100.0000
ltrigg-rtg2SNP*map_l100_m0_e0het
98.1524
96.5763
99.7808
50.2243
2047972620484453
6.6667
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0877
94.7254
99.5709
28.2155
13038726132265756
98.2456
asubramanian-gatkINDEL*map_siren*
93.9319
90.2024
97.9830
94.1412
6684726670413823
16.6667
raldana-dualsentieonINDEL*HG002compoundhethet
83.9323
82.2912
85.6402
78.9688
33697253137526520
98.8593
ckim-dragenSNP*map_siren*
98.9989
99.5042
98.4987
58.4236
1455037251455172218229
10.3246
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
45.3594
46.8085
43.9974
84.7177
63872566784919
2.2379
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
83.1458
71.4848
99.3528
29.1555
18157241842129
75.0000
ckim-isaacSNP*map_l250_m0_e0het
68.2076
51.9256
99.3647
94.7881
78272478251
20.0000
jpowers-varprowlSNPtimap_l100_m0_e0*
97.4083
96.6745
98.1533
73.0718
2104772421048396147
37.1212
ciseli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
85.1821
88.1350
82.4206
72.9298
537872454481162656
56.4544
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
92.2062
93.5907
90.8621
57.8426
10572724105501061847
79.8303
egarrison-hhgaINDELI6_15*hetalt
95.1738
91.5448
99.1023
37.9004
782872378387163
88.7324
egarrison-hhgaINDELI6_15HG002compoundhethetalt
95.3278
91.5310
99.4533
27.1869
781472378234337
86.0465
mlin-fermikitSNPtimap_l250_m0_e0het
36.6957
22.5910
97.6852
83.7594
21172321151
20.0000
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
58.9260
45.7207
82.8571
79.6003
60972360912621
16.6667
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.4663
89.9219
99.4945
27.8754
645172364953328
84.8485
qzeng-customSNPtimap_l250_m2_e1homalt
74.0705
59.2551
98.7643
89.0815
105072210391312
92.3077
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
89.4833
97.3914
82.7630
66.8151
26956722270135626378
6.7188
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2203
97.7012
98.7450
60.3971
3068672230686390372
95.3846
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2203
97.7012
98.7450
60.3971
3068672230686390372
95.3846
gduggal-bwavardSNP*map_l100_m2_e0homalt
98.6138
97.3767
99.8826
62.7969
26801722263813125
80.6452
mlin-fermikitSNP*segdup*
98.0230
97.4311
98.6220
85.8156
2734672127340382136
35.6021
hfeng-pmm1INDELI1_5HG002compoundhet*
96.2606
94.1648
98.4519
64.4321
1163572111638183176
96.1749
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
59.6413
42.4920
100.0000
90.0000
532720100
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1527
97.7494
98.5592
55.1204
3127272031194456439
96.2719
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.1108
97.1608
97.0609
55.5769
2463972024636746544
72.9223
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.2250
84.5061
99.1045
23.0475
392772039843630
83.3333
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3306
96.7640
97.9038
49.8941
2153072021531461429
93.0586
gduggal-snapplatSNPtvmap_l125_m1_e0homalt
93.4557
87.7304
99.9806
69.1888
5141719514210
0.0000
gduggal-bwavardSNP*map_l150_m2_e1*
95.0047
97.7678
92.3934
83.1339
31491719310832559143
5.5881
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
55.5323
39.1709
95.3662
55.2807
4637196383130
96.7742
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
91.7626
87.4564
96.5147
48.4959
5013719504018291
50.0000
jli-customINDELI1_5HG002compoundhet*
96.2734
94.1810
98.4609
66.0757
1163771911643182172
94.5055
astatham-gatkINDELI6_15**
97.8089
97.1035
98.5247
52.8353
2410471924109361337
93.3518
gduggal-snapplatSNPtvmap_l125_m2_e1het
93.3381
93.1962
93.4803
85.9836
98357189836686353
51.4577
ndellapenna-hhgaINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
61.4859
44.5131
99.3789
49.1043
57671848032
66.6667
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
86.8762
81.9779
92.3970
60.2527
32667183342275210
76.3636
gduggal-bwavardINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
43.5803
37.0727
52.8590
78.7470
423718416371276
74.3935
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
81.0867
68.5777
99.1772
58.7467
15677181567135
38.4615
egarrison-hhgaINDELD6_15HG002complexvar*
89.5440
86.4579
92.8586
57.3769
45847184590353276
78.1870
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
94.0526
89.4976
99.0961
23.7208
611071762495754
94.7368
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
0717000
hfeng-pmm1INDEL*HG002compoundhethet
86.5457
82.4866
91.0249
77.7276
33777173144310291
93.8710
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
0717000
gduggal-snapplatINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
23.2024
14.2344
62.7119
73.6999
119717111669
13.6364
rpoplin-dv42INDELI1_5*hetalt
96.4651
93.5954
99.5163
62.8772
10478717104935148
94.1176
rpoplin-dv42SNP*map_siren*
99.6224
99.5097
99.7354
54.5067
145511717145497386225
58.2902
hfeng-pmm1SNPtvHG002complexvar*
99.8458
99.7087
99.9833
21.6860
2454357172453494120
48.7805
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
60.9906
94.2736
45.0765
50.8414
11804717118381442414189
98.3708