PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1239 1240 1241 1242 1243 1244 1245 1246 1247 ... 1720 1721 » 62101-62150 / 86044 show all
ckim-gatk	INDEL	C6_15	map_l250_m0_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m1_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m1_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m1_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m1_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m2_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m2_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m2_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m2_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m2_e1	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m2_e1	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_l250_m2_e1	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_siren	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_siren	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_siren	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	map_siren	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	segdup	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	segdup	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	segdup	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	segdup	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	segdupwithalt	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	segdupwithalt	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	segdupwithalt	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	tech_badpromoters	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	tech_badpromoters	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	tech_badpromoters	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	D16_PLUS	HG002compoundhet	homalt	44.4444	100.0000	28.5714	72.5490	8	0	8	20	20	100.0000
ckim-gatk	INDEL	D16_PLUS	decoy	*	100.0000	100.0000	100.0000	99.5807	6	0	6	0	0
ckim-gatk	INDEL	D16_PLUS	decoy	het	100.0000	100.0000	100.0000	99.6572	4	0	4	0	0
ckim-gatk	INDEL	D16_PLUS	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	D16_PLUS	decoy	homalt	100.0000	100.0000	100.0000	99.1304	2	0	2	0	0
ckim-gatk	INDEL	D16_PLUS	func_cds	*	100.0000	100.0000	100.0000	83.3333	12	0	12	0	0
ckim-gatk	INDEL	D16_PLUS	func_cds	het	100.0000	100.0000	100.0000	85.4545	8	0	8	0	0
ckim-gatk	INDEL	D16_PLUS	func_cds	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	D16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	76.4706	4	0	4	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	99.8487	1	0	1	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	87.5000	1	0	1	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7101	100.0000	99.4220	81.3578	172	0	172	1	1	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	99.8445	1	0	1	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	83.3333	1	0	1	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9592	361	0	361	2	1	50.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	47.2637	211	0	211	1	0	0.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	78.6885	100.0000	64.8649	84.2999	169	0	72	39	38	97.4359

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge