PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
5951-6000 / 86044 show all
gduggal-bwaplatINDELD1_5map_siren*
87.3512
77.9824
99.2785
89.5187
27527772752207
35.0000
anovak-vgINDEL*map_l100_m2_e1het
70.6838
66.8374
75.0000
86.9385
15667771653551156
28.3122
qzeng-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
91.1226
86.4620
96.3144
38.7578
495677618319701658
93.8659
ckim-gatkSNPtvmap_l250_m1_e0het
70.9926
56.6312
95.1128
96.8261
10127751012521
1.9231
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2357
94.9731
99.6087
58.9389
14642775147635858
100.0000
asubramanian-gatkINDELI6_15HG002compoundhet*
93.0480
91.1691
95.0059
37.8731
80017758009421405
96.1995
bgallagher-sentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2548
94.9731
99.6489
58.8526
14642775147595252
100.0000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9211
94.3694
99.6146
31.5700
12989775131825150
98.0392
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2575
98.7987
99.7206
70.8721
6365777463532178101
56.7416
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
50.3713
34.4623
93.5632
71.0771
4077744072821
75.0000
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
31.2539
22.7545
49.8886
70.3042
228774224225200
88.8889
cchapple-customSNP*map_l125_m1_e0het
96.0557
97.2739
94.8677
77.0814
27618774276531496342
22.8610
ciseli-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
2.3960
0.0000
0.0000
19774000
ltrigg-rtg1INDEL**homalt
99.6060
99.3824
99.8305
54.1259
124398773124268211185
87.6777
egarrison-hhgaINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
57.3427
40.2628
99.5902
49.2196
52177348622
100.0000
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
93.1550
88.6524
98.1395
56.7404
60397738441616
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
57.3175
40.2014
99.8145
34.3484
51977253811
100.0000
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
83.8433
0.0000
0.0000
4001771000
gduggal-bwavardSNPtimap_l125_m2_e1*
96.0728
97.4778
94.7076
79.7669
29798771295271650116
7.0303
jli-customINDELD1_5**
99.6468
99.4746
99.8195
58.9401
145974771146018264201
76.1364
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
23.1120
18.1529
31.7992
75.7484
1717711523263
0.9202
anovak-vgINDELD16_PLUSHG002complexvar*
63.7181
53.0736
79.7034
53.6711
872771860219154
70.3196
asubramanian-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4217
98.4028
98.4406
75.5838
4750077149303781332
42.5096
hfeng-pmm2INDELI6_15**
97.8481
96.8980
98.8171
51.0141
2405377024058288265
92.0139
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.9231
95.7613
94.0995
63.0798
17396770173991091598
54.8121
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.9231
95.7613
94.0995
63.0798
17396770173991091598
54.8121
qzeng-customINDEL*map_l100_m2_e1*
84.2732
79.4995
89.6568
87.9718
2986770384044369
15.5756
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
66.9020
71.8258
62.6099
52.3713
196377022071318760
57.6631
ckim-isaacINDEL*map_l125_m2_e0*
78.3417
64.9818
98.6169
88.3010
14277691426208
40.0000
gduggal-bwavardSNPtimap_l125_m2_e0*
96.0478
97.4585
94.6773
79.7239
29489769292251643116
7.0603
gduggal-snapfbSNP*map_l100_m2_e0homalt
98.4327
97.2060
99.6907
70.5354
26754769267568330
36.1446
gduggal-snapfbSNP*map_l100_m2_e1homalt
98.4483
97.2334
99.6939
70.5179
27027769270298330
36.1446
ckim-vqsrSNPtvmap_l250_m2_e1homalt
31.5227
18.7104
100.0000
97.3700
17776917700
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.3294
95.6482
97.0203
55.0608
1690276916899519497
95.7611
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.3294
95.6482
97.0203
55.0608
1690276916899519497
95.7611
cchapple-customSNPtv*het
99.6701
99.8702
99.4708
26.9512
5909287685915533147233
7.4039
mlin-fermikitINDELI1_5HG002complexvarhet
96.6423
95.7777
97.5227
51.7717
1742176817282439429
97.7221
bgallagher-sentieonINDELI1_5*hetalt
96.4303
93.1398
99.9619
60.7048
104277681048944
100.0000
jpowers-varprowlINDEL*HG002compoundhethet
23.2624
81.2408
13.5747
59.7974
332676835022229622169
99.4304
bgallagher-sentieonINDELI1_5HG002compoundhethetalt
96.4336
93.1377
99.9714
55.3771
104107671047033
100.0000
qzeng-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
67.5824
100.0000
1599767000
gduggal-bwaplatINDELI1_5map_siren*
85.1433
74.4759
99.3775
89.0629
22387672235148
57.1429
ltrigg-rtg1INDELD6_15**
98.2810
97.0642
99.5288
47.5098
253267662513311976
63.8655
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
82.7487
71.4392
98.3125
49.4079
191676618063120
64.5161
gduggal-snapfbSNP*map_l100_m1_e0homalt
98.4097
97.1633
99.6885
68.9633
26237766262398229
35.3659
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
13.0281
7.0388
87.3684
61.2245
58766831211
91.6667
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
13.0281
7.0388
87.3684
61.2245
58766831211
91.6667
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
11.1206
7.0388
26.4706
75.6646
5876663175113
64.5714
asubramanian-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.8573
92.4054
93.3136
74.7428
93087659462678457
67.4041
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
91.7145
87.1038
96.8405
38.5031
51677655180169126
74.5562