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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
5851-5900 / 86044 show all
ckim-isaacINDEL*map_sirenhomalt
82.0615
69.8682
99.4105
72.7551
18558001855117
63.6364
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8427
98.3427
99.3479
69.0114
4747180076325501389
77.6447
eyeh-varpipeINDELI16_PLUSHG002complexvar*
52.3530
38.8846
80.0955
45.7686
509800503125124
99.2000
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200*
64.5816
61.9705
67.4224
73.1294
13027991368661606
91.6793
hfeng-pmm3INDELI6_15**
97.8954
96.7812
99.0356
49.5509
2402479924029234222
94.8718
gduggal-snapplatSNPtvHG002compoundhethet
71.6435
82.9018
63.0774
69.0248
387479939192294156
6.8004
gduggal-snapvardSNPtimap_l150_m2_e0*
92.6480
96.1047
89.4313
82.4164
19713799195302308189
8.1889
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
82.0117
91.2515
74.4710
86.1394
833479982352823102
3.6132
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
82.0117
91.2515
74.4710
86.1394
833479982352823102
3.6132
ciseli-customINDEL*map_l125_m1_e0*
67.4524
62.0788
73.8444
90.3002
13087991310464300
64.6552
ckim-gatkSNPtvmap_l250_m2_e0het
72.7389
58.8660
95.1667
96.8726
11427981142581
1.7241
ckim-dragenINDELI1_5*hetalt
96.2953
92.8718
99.9809
60.6438
103977981045122
100.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.6793
98.2539
97.1113
81.2381
44904798448121333148
11.1028
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6793
98.2539
97.1113
81.2381
44904798448121333148
11.1028
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
92.5120
87.0957
98.6467
70.2422
538679853947411
14.8649
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
82.7813
80.4513
85.2502
40.8125
32807973254563503
89.3428
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
92.4417
95.1488
89.8844
58.8124
15632797156301759720
40.9323
jlack-gatkSNP*HG002complexvar*
99.9118
99.8944
99.9292
19.3948
753584797753425534201
37.6404
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8950
94.3201
99.6144
34.3188
13235797134335250
96.1538
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
94.6745
93.2968
96.0934
44.0771
1107979611069450425
94.4444
rpoplin-dv42INDELD6_15**
97.4536
96.9493
97.9633
52.8335
2529679625300526501
95.2471
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
93.4534
92.3513
94.5822
43.0987
961179614228815315
38.6503
ckim-dragenINDELI1_5HG002compoundhethetalt
96.3036
92.8872
99.9808
55.1746
103827951043222
100.0000
ckim-isaacINDELI16_PLUSHG002complexvar*
52.2963
39.2666
78.2675
62.9505
51479551514346
32.1678
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2064
95.5068
98.9676
53.3545
1687779416872176162
92.0455
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2064
95.5068
98.9676
53.3545
1687779416872176162
92.0455
ckim-isaacINDEL*HG002compoundhethet
56.9247
80.6302
43.9912
64.9439
3301793240530622738
89.4187
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
0793000
eyeh-varpipeINDELD16_PLUSHG002complexvar*
59.4403
51.7955
69.7324
50.7211
851792834362361
99.7238
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
77.4749
88.1419
69.1110
56.7739
5887792625827971501
53.6646
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
57.4446
41.4634
93.4708
72.4562
5617925443836
94.7368
asubramanian-gatkINDELI1_5HG002compoundhet*
95.2373
93.5902
96.9436
67.0365
1156479211577365350
95.8904
hfeng-pmm1INDELI6_15**
97.8503
96.8134
98.9096
50.1395
2403279124037265246
92.8302
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
87.7042
78.9949
98.5719
61.4567
297179029684328
65.1163
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
87.7042
78.9949
98.5719
61.4567
297179029684328
65.1163
cchapple-customINDELI6_15**
97.7435
96.8215
98.6833
49.3635
2403478925632342305
89.1813
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
76.1858
63.3364
95.5758
44.5914
136378913616354
85.7143
rpoplin-dv42INDELI1_5HG002compoundhet*
95.3045
93.6144
97.0566
64.5995
1156778911574351345
98.2906
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
76.1858
63.3364
95.5758
45.0405
136378913616351
80.9524
gduggal-snapplatINDELI6_15HG002complexvarhetalt
51.2055
35.5683
91.3793
60.4433
4357884244034
85.0000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
86.2084
80.6245
92.6232
55.4837
32797883252259195
75.2896
ckim-isaacSNPtvmap_l150_m0_e0homalt
57.8158
40.6627
100.0000
71.4889
54078854000
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
82.5452
70.6189
99.3183
55.6924
189478818941313
100.0000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.7566
0.0000
0.0000
6787000
ltrigg-rtg1SNP*map_l100_m2_e1het
99.0006
98.3219
99.6887
57.1362
461117874610914412
8.3333
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.7566
0.0000
0.0000
6787000
jmaeng-gatkSNP*map_l250_m0_e0het
63.5159
47.7424
94.8549
98.4462
719787719392
5.1282
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1915
97.4975
98.8955
61.4377
3062278630622342309
90.3509
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1915
97.4975
98.8955
61.4377
3062278630622342309
90.3509
ltrigg-rtg1SNP*map_l100_m2_e0het
98.9994
98.3060
99.7027
57.0672
456137864561113612
8.8235