PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
5451-5500 / 86044 show all
ltrigg-rtg1SNPtv*het
99.7418
99.8465
99.6372
20.0234
590796908591027215250
2.3234
ckim-vqsrSNPtvmap_l250_m2_e0het
68.7313
53.1959
97.0837
97.2198
10329081032310
0.0000
ciseli-customSNPtvmap_l250_m2_e1het
60.2121
53.7913
68.3733
93.6004
1057908105548821
4.3033
ltrigg-rtg2SNP*map_l100_m2_e0het
98.8752
98.0452
99.7194
53.1503
45492907454911288
6.2500
ltrigg-rtg2SNP*map_l100_m2_e1het
98.8788
98.0660
99.7052
53.2399
45991907459901368
5.8824
gduggal-snapplatSNPtimap_l100_m0_e0homalt
93.7346
88.3329
99.8399
63.4054
686790768601111
100.0000
gduggal-snapfbSNP*HG002complexvarhomalt
99.5552
99.6857
99.4250
21.2913
2876689072877331664399
23.9784
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
1.3072
0.6579
100.0000
86.2745
6906700
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.9906
94.9155
89.2405
50.9643
169139064345352393113
59.4197
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
93.4986
91.8437
95.2143
47.2808
1020290616374823701
85.1762
hfeng-pmm2INDELD1_5HG002compoundhet*
95.6235
92.5950
98.8568
63.0617
1132990611328131126
96.1832
hfeng-pmm2SNPtv**
99.9268
99.9066
99.9471
21.6564
96878490696870551342
8.1871
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
40.2163
27.6358
73.8220
36.9637
3469061415012
24.0000
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.8320
92.1659
99.8018
61.7166
10647905105772111
52.3810
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.8320
92.1659
99.8018
61.7166
10647905105772111
52.3810
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
64.6167
62.4637
66.9234
55.7051
15069051564773382
49.4179
anovak-vgSNPtvmap_l150_m2_e1homalt
87.3530
78.1084
99.0798
73.8866
322990532303023
76.6667
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
4.1314
0.0000
0.0000
39905000
raldana-dualsentieonINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.2233
91.0156
95.5407
66.1212
91689059020421396
94.0618
astatham-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1675
99.0429
99.2924
73.5960
9354590493452666582
87.3874
jpowers-varprowlSNPtimap_l100_m2_e0het
97.5401
97.0479
98.0373
72.8725
2971890429720595164
27.5630
ciseli-customSNPtvmap_l125_m2_e0homalt
87.1292
84.9759
89.3945
70.0273
51139045108606472
77.8878
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
73.4008
67.1988
80.8639
50.5130
18529041872443412
93.0023
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.0426
94.5944
99.6209
40.6185
15802903160296160
98.3607
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.0426
94.5944
99.6209
40.6185
15802903160296160
98.3607
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
83.7086
81.9364
85.5593
74.2891
40969034100692601
86.8497
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
83.7086
81.9364
85.5593
74.2891
40969034100692601
86.8497
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
59.8228
58.1169
61.6319
75.6941
125390316241011502
49.6538
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
59.1529
51.0315
70.3486
60.3619
9409021433604512
84.7682
gduggal-bwaplatINDELI6_15*homalt
91.2395
85.5426
97.7493
57.4509
53379025342123103
83.7398
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
38.1468
23.7733
96.4789
45.0677
281901274107
70.0000
ltrigg-rtg2SNP*map_l100_m1_e0het
98.8659
98.0136
99.7330
50.5607
44458901444561198
6.7227
ckim-dragenSNP**het
99.7355
99.9519
99.5199
24.5349
187268690118730389035444
4.9142
hfeng-pmm2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8203
98.1335
99.5168
73.5903
4737090147163229165
72.0524
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7273
95.9551
99.5663
48.2367
21350900213519382
88.1720
gduggal-bwafbINDELI6_15HG002complexvar*
87.6466
81.2187
95.1793
49.2161
38929004008203196
96.5517
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
96.9824
96.8153
97.1501
58.2231
2736090027373803642
79.9502
qzeng-customSNPtvmap_l250_m1_e0*
76.9830
65.9992
92.3526
95.3560
17479001739144117
81.2500
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
78.5748
67.1057
94.7725
26.6989
18348995602309300
97.0874
gduggal-snapfbSNP*map_sirenhomalt
99.0661
98.3701
99.7720
60.7462
542578995425712441
33.0645
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
62.3929
45.5428
99.0338
45.1898
75189861565
83.3333
anovak-vgSNPtimap_l250_m2_e1*
75.8245
82.3089
70.2872
91.6096
417889841611759398
22.6265
asubramanian-gatkSNP*segdup*
98.1237
96.8005
99.4836
92.0357
271698982716314114
9.9291
ciseli-customSNPtvmap_l250_m2_e0het
60.1108
53.7113
68.2415
93.5631
1042898104048421
4.3388
cchapple-customSNPtimap_l125_m1_e0*
97.0755
96.9422
97.2092
72.6876
2843889728423816227
27.8186
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
49.4821
41.3725
61.5460
81.3094
633897629393384
97.7099
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
49.4821
41.3725
61.5460
81.3094
633897629393384
97.7099
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
93.6075
0.0000
0.0000
13135897000
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.6093
91.9316
99.5935
30.0616
10209896102904237
88.0952
anovak-vgSNPtvmap_l150_m2_e0homalt
87.3307
78.0798
99.0683
73.9018
318889531903023
76.6667