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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
5351-5400 / 86044 show all
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
26.7835
20.7451
37.7805
22.4371
245936303499460
92.1844
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.7961
88.8038
99.3832
46.4455
742493674124633
71.7391
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.7961
88.8038
99.3832
46.4455
742493674124633
71.7391
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
28.5107
24.0260
35.0540
65.4357
296936292541480
88.7246
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
79.8828
68.6011
95.6054
61.8717
204593620459428
29.7872
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
4.6119
2.5026
29.3478
74.2297
24935276539
60.0000
cchapple-customINDELI1_5*het
99.2835
98.8171
99.7543
58.7353
7810693589725221127
57.4661
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9266
94.4029
99.5890
36.4317
15770935159926664
96.9697
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9266
94.4029
99.5890
36.4317
15770935159926664
96.9697
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9358
97.0774
98.8095
45.2536
3105793541417499447
89.5792
raldana-dualsentieonINDELI6_15HG002compoundhet*
92.3351
89.3573
95.5182
36.0215
78429347843368366
99.4565
gduggal-bwaplatSNPtimap_l250_m0_e0*
48.2606
31.8978
99.0930
98.5682
43793343740
0.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.4704
93.2214
99.9539
31.0883
128319331301965
83.3333
ckim-gatkINDELI1_5*hetalt
95.6301
91.6749
99.9419
60.1212
102639321032565
83.3333
ltrigg-rtg2INDEL**homalt
99.5524
99.2554
99.8512
52.3128
124239932124115185162
87.5676
mlin-fermikitINDEL*map_l125_m2_e1*
69.4080
58.1573
86.0558
82.7274
12949311296210161
76.6667
egarrison-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.1721
98.0713
90.5711
70.5632
473409314830750294714
93.7363
ckim-gatkINDELI1_5HG002compoundhethetalt
95.6413
91.6793
99.9612
55.8202
102479301030844
100.0000
hfeng-pmm3SNPtiHG002complexvar*
99.9019
99.8171
99.9868
17.4486
5075069305074466725
37.3134
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
29.6071
24.5130
37.3737
73.8468
302930481806369
45.7816
jlack-gatkINDELD1_5*hetalt
95.0041
90.9322
99.4577
62.5612
931692993545146
90.1961
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
83.4657
81.8519
85.1445
71.6183
41909294184730709
97.1233
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
93.3376
91.6367
95.1028
49.5731
101799299943512284
55.4688
ciseli-customSNPtimap_l100_m0_e0homalt
88.5269
88.0499
89.0090
60.4888
68459296835844695
82.3460
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
32.0845
29.5144
35.1449
62.1659
389929388716700
97.7654
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
90.9106
86.5682
95.7115
51.1635
59819284419198174
87.8788
jpowers-varprowlINDELD6_15*het
70.9404
91.9945
57.7285
54.4042
106649281068978277764
99.1951
dgrover-gatkINDELI1_5**
99.5294
99.3841
99.6753
59.0782
149736928149786488385
78.8934
mlin-fermikitSNPtimap_l250_m1_e0homalt
53.4856
42.2526
72.8541
73.1257
679928679253229
90.5138
raldana-dualsentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.8972
93.9872
99.9932
58.6098
144909271460611
100.0000
mlin-fermikitINDEL*map_l125_m2_e0*
69.1050
57.7869
85.9364
82.6204
12699271271208160
76.9231
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
1.8008
0.0000
0.0000
17927000
gduggal-snapfbSNP*map_l125_m0_e0*
95.4423
95.2231
95.6625
77.2744
1845992618460837394
47.0729
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.3383
88.9709
89.7087
51.9572
7470926125961445343
23.7370
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
50.2630
46.4740
54.7247
37.4043
804926805666663
99.5495
egarrison-hhgaINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
82.4573
73.9961
93.1034
68.3567
26359262673198164
82.8283
egarrison-hhgaINDELD1_5HG002complexvar*
97.4539
97.1695
97.7400
55.3894
3178992631787735582
79.1837
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
89.2141
84.4066
94.6024
34.3983
500792511480655637
97.2519
astatham-gatkSNP*map_l250_m1_e0*
92.7803
87.1919
99.1341
90.2158
629792562975519
34.5455
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1776
97.0330
99.3494
70.2755
302199243023619822
11.1111
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1776
97.0330
99.3494
70.2755
302199243023619822
11.1111
rpoplin-dv42SNPti*het
99.9511
99.9279
99.9742
18.1937
12809679241280907330164
49.6970
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
9.8376
5.2308
82.4742
81.6635
51924801716
94.1176
jlack-gatkINDELD1_5HG002compoundhethetalt
95.0540
90.9554
99.5394
57.6003
929292492934340
93.0233
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.5302
94.7711
96.3016
56.4893
1674792416743643577
89.7356
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.5302
94.7711
96.3016
56.4893
1674792416743643577
89.7356
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.3040
97.2229
99.4094
71.0102
3231392338374228113
49.5614
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
71.1558
89.0067
59.2690
47.6573
7473923186651282711064
86.2556
gduggal-bwavardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
84.9850
73.9327
99.9224
57.1120
2615922257622
100.0000
anovak-vgINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
39.0803
30.2044
55.3435
41.1500
399922725585494
84.4444