PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
5101-5150 / 86044 show all
ndellapenna-hhgaSNPtvHG002complexvar*
99.7569
99.5881
99.9262
21.8704
2451381014245164181131
72.3757
gduggal-bwaplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
84.4268
73.3771
99.3944
39.7122
2792101327901715
88.2353
gduggal-snapvardSNP*map_l100_m2_e1homalt
98.0418
96.3556
99.7880
62.8493
267831013263575643
76.7857
gduggal-bwavardINDELI1_5HG002complexvarhomalt
96.0632
92.4747
99.9414
32.6716
1243610121193175
71.4286
ndellapenna-hhgaSNP*map_sirenhet
99.3524
98.8878
99.8214
53.1990
8997910128998016158
36.0248
raldana-dualsentieonINDEL*HG002complexvarhet
98.7829
97.8101
99.7752
56.2974
4520010124483110172
71.2871
bgallagher-sentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0261
98.9285
99.1239
73.3821
93437101293346825733
88.8485
rpoplin-dv42INDELD1_5**
99.4429
99.3110
99.5751
58.2332
1457341011145779622549
88.2637
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.6123
74.0570
95.9987
49.9006
28861011290312183
68.5950
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0845
92.7950
99.6157
30.7178
130211011132205151
100.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.9132
85.7987
98.9660
29.1571
6102101064136758
86.5672
rpoplin-dv42INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.3657
89.9732
92.8019
79.8114
906310108999698633
90.6877
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0921
92.8093
99.6158
30.7146
130231009132225151
100.0000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8990
97.6739
98.1251
62.1451
42327100842130805744
92.4224
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
85.4276
75.0062
99.2121
42.1023
3022100730222422
91.6667
ghariani-varprowlSNPtiHG002complexvarhet
99.4535
99.6801
99.2280
19.8744
3137541007313878244284
3.4398
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
83.6293
78.9187
88.9381
47.0175
376610061809225103
45.7778
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0483
92.8307
99.4969
46.1918
130261006132506766
98.5075
anovak-vgINDEL*map_l100_m2_e0*
72.4393
72.7593
72.1222
84.8313
2687100627631068640
59.9251
gduggal-snapplatSNPtilowcmp_SimpleRepeat_quadTR_11to50het
89.2479
85.0979
93.8235
76.4116
57391005574237840
10.5820
gduggal-bwaplatINDELD6_15*homalt
90.8801
84.1132
98.8312
57.2595
5321100553276357
90.4762
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
26.8490
23.6502
31.0484
54.2013
3111004308684676
98.8304
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.6166
92.7056
98.7164
31.4832
12760100413612177161
90.9605
mlin-fermikitSNPtimap_l250_m2_e1homalt
54.4040
43.3973
72.8910
76.6541
7691003769286261
91.2587
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.4763
84.1506
91.0757
53.9857
532010029889969796
82.1465
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.4763
84.1506
91.0757
53.9857
532010029889969796
82.1465
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
23.4714
18.6688
31.6005
60.9925
2301002231500487
97.4000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9331
96.8097
99.0829
51.7183
30406100231224289257
88.9273
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9331
96.8097
99.0829
51.7183
30406100231224289257
88.9273
gduggal-snapvardINDELI1_5HG002complexvarhetalt
0.0000
41.9710
0.0000
0.0000
7241001000
gduggal-snapplatINDELI1_5HG002complexvarhetalt
55.6197
42.0046
82.2940
85.5161
7251001739159112
70.4403
ltrigg-rtg1SNPtiHG002complexvarhet
99.8233
99.6823
99.9646
17.0356
313766100031377811123
20.7207
cchapple-customSNP*map_l150_m1_e0*
96.5908
96.7363
96.4458
77.1687
29610999296051091240
21.9982
gduggal-snapvardSNP*map_l100_m2_e0homalt
98.0484
96.3703
99.7860
62.8472
26524999261075643
76.7857
bgallagher-sentieonSNP***
99.9296
99.9673
99.8919
18.9151
305362099930534713303195
5.9037
ltrigg-rtg1SNP*map_sirenhet
99.2561
98.9032
99.6115
48.6936
899929988999635116
4.5584
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_quadTR_11to50het
91.5844
85.2017
99.0009
65.9710
574699857475817
29.3103
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
77.6919
72.9319
83.1165
45.6084
26899982939597575
96.3149
raldana-dualsentieonSNPtv**
99.9049
99.8971
99.9127
21.2799
96869299896861284644
5.2010
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
24.3587
15.4953
56.9132
61.6995
18399817713497
72.3881
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1413
92.8877
99.6311
33.7242
13034998132344949
100.0000
jpowers-varprowlINDELD6_15HG002complexvarhetalt
0.0000
1.5795
0.0000
0.0000
16997000
ltrigg-rtg1INDELD1_5*het
99.2847
98.8627
99.7103
52.7629
865789968637825152
20.7171
ciseli-customSNP*map_l125_m0_e0homalt
85.9540
85.1609
86.7620
68.6495
57169965702870708
81.3793
eyeh-varpipeINDELI6_15*homalt
77.6886
84.0359
72.2329
34.4939
5243996527320272012
99.2600
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1489
92.9019
99.6311
33.4986
13036996132324948
97.9592
ghariani-varprowlINDELD6_15HG002complexvarhetalt
0.0000
1.6782
0.0000
0.0000
17996000
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_51to200*
56.1509
52.5940
60.2239
47.9612
110599616141066694
65.1032
ltrigg-rtg2SNP*map_l100_m2_e0*
99.2235
98.6534
99.8003
56.1674
729689967296514624
16.4384
ltrigg-rtg2SNP*map_l100_m2_e1*
99.2263
98.6673
99.7916
56.2116
737419967373815424
15.5844