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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
5001-5050 / 86044 show all
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
70.2572
87.5000
58.6914
56.3300
73151045726651144566
89.2843
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
70.2572
87.5000
58.6914
56.3300
73151045726651144566
89.2843
mlin-fermikitINDELI16_PLUSHG002compoundhethetalt
66.4170
50.0717
98.6059
45.0179
1048104510611514
93.3333
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
71.7034
76.5182
67.4586
62.2452
34021044374818081171
64.7677
ltrigg-rtg1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.7006
97.8372
99.5793
71.1392
4722710444710519954
27.1357
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
92.6853
87.1155
99.0159
25.1484
7052104372447268
94.4444
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
27.0890
20.6844
39.2387
39.7707
2721043268415363
87.4699
gduggal-bwavardSNP*map_l125_m1_e0*
95.6870
97.6989
93.7563
78.5243
442841043437122911180
6.1834
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
91.6751
85.4753
98.8445
42.9599
613210429411111
100.0000
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
79.8601
67.5701
97.6148
72.4420
2169104121695350
94.3396
astatham-gatkSNP*map_l250_m2_e1*
92.6875
86.9663
99.2144
90.7902
6946104169465519
34.5455
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0894
96.6856
99.5346
57.0832
30367104130368142126
88.7324
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0894
96.6856
99.5346
57.0832
30367104130368142126
88.7324
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
78.4461
79.6640
77.2650
73.1213
4078104140681197480
40.1003
qzeng-customSNPtvmap_l100_m0_e0homalt
83.9304
72.9329
98.8335
64.8615
2805104127963333
100.0000
jpowers-varprowlSNP*map_l125_m2_e0het
96.7249
96.4527
96.9986
79.0213
28278104028278875244
27.8857
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_51to200*
52.7192
50.5474
55.0862
52.4074
10621039991808803
99.3812
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8510
97.6024
98.1008
61.8066
42296103942098815759
93.1288
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
91.7285
85.5171
98.9129
30.0899
6135103964607161
85.9155
ckim-isaacSNPtvmap_l250_m2_e0het
63.3205
46.4948
99.2299
92.2101
902103890271
14.2857
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
93.7863
0.0000
0.0000
156671038000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
93.7863
0.0000
0.0000
156671038000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.7473
94.3151
97.2237
42.8173
17221103817930512480
93.7500
jpowers-varprowlSNP*map_l150_m1_e0*
97.1070
96.6121
97.6070
79.3678
29572103729572725231
31.8621
gduggal-snapfbSNPtvHG002complexvar*
98.7938
99.5787
98.0211
25.3464
24511810372454404955529
10.6761
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
79.4509
70.3322
91.2863
53.7682
245610361540147142
96.5986
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7526
96.6010
98.9320
70.8092
29444103628994313239
76.3578
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7526
96.6010
98.9320
70.8092
29444103628994313239
76.3578
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_11to50*
80.6495
78.6024
82.8061
85.2794
38021035384879994
11.7647
anovak-vgINDEL*map_l100_m2_e1*
72.2208
72.4441
71.9990
84.9008
2721103527951087655
60.2576
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
20.0155
0.0000
0.0000
2591035000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
18.3933
12.4471
35.2174
39.3140
1471034162298265
88.9262
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.7447
84.4675
83.0341
89.9808
562310345643115377
6.6782
anovak-vgINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
15.2225
9.4654
38.8554
56.6013
1081033129203109
53.6946
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.5812
92.6383
98.7173
34.2439
12999103313853180164
91.1111
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
41.1230
32.4837
56.0227
78.9373
4971033493387383
98.9664
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
41.1230
32.4837
56.0227
78.9373
4971033493387383
98.9664
astatham-gatkSNP*map_l250_m2_e0*
92.6519
86.9119
99.2038
90.7351
6853103268535519
34.5455
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
69.9207
56.4189
91.9178
94.1495
13361032134211826
22.0339
jpowers-varprowlSNP*map_l125_m1_e0het
96.6905
96.3687
97.0145
77.6907
27361103127361842242
28.7411
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
78.1416
74.7118
81.9014
40.1032
304610313041672667
99.2560
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.0454
96.7804
99.3438
49.5652
30962103030885204187
91.6667
ciseli-customSNPtvHG002compoundhethet
56.8474
77.9585
44.7336
53.7648
364310303678454489
1.9586
gduggal-snapvardINDELD16_PLUSHG002complexvarhet
12.2286
7.0461
46.2366
72.6872
7810298610053
53.0000
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
76.3516
67.9439
87.1341
64.1684
218110292262334260
77.8443
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1330
96.7301
99.5772
56.3405
30381102730382129103
79.8450
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1330
96.7301
99.5772
56.3405
30381102730382129103
79.8450
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
89.3755
92.9518
86.0642
79.3543
135441027138092236557
24.9106
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.3755
92.9518
86.0642
79.3543
135441027138092236557
24.9106
ckim-isaacINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.9979
73.8865
89.6241
43.4171
290310262885334316
94.6108