PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49851-49900 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 74.5020 | 63 | 5 | 63 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 94.3820 | 89.3617 | 100.0000 | 94.9766 | 42 | 5 | 43 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 94.2857 | 92.9577 | 95.6522 | 93.7838 | 66 | 5 | 66 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 94.2857 | 92.9577 | 95.6522 | 93.9314 | 66 | 5 | 66 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | segdup | het | 97.2067 | 94.5652 | 100.0000 | 96.0775 | 87 | 5 | 87 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.7959 | 81.4815 | 100.0000 | 92.4528 | 22 | 5 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2984 | 97.1429 | 99.4819 | 65.9011 | 170 | 5 | 192 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.2241 | 93.9024 | 83.1933 | 72.9545 | 77 | 5 | 99 | 20 | 18 | 90.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.4382 | 90.1961 | 99.0991 | 85.5280 | 46 | 5 | 110 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_siren | hetalt | 97.2727 | 95.5357 | 99.0741 | 87.9867 | 107 | 5 | 107 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_siren | homalt | 95.5056 | 94.4444 | 96.5909 | 86.3142 | 85 | 5 | 85 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D1_5 | func_cds | het | 90.3955 | 94.1176 | 86.9565 | 42.5000 | 80 | 5 | 80 | 12 | 8 | 66.6667 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 3 | 5 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | func_cds | het | 81.3559 | 82.7586 | 80.0000 | 46.4286 | 24 | 5 | 24 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | het | 80.1909 | 82.7586 | 77.7778 | 92.4051 | 24 | 5 | 28 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | map_l150_m1_e0 | het | 80.3240 | 87.1795 | 74.4681 | 92.3948 | 34 | 5 | 35 | 12 | 7 | 58.3333 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | * | 78.6127 | 77.2727 | 80.0000 | 96.3636 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | * | 78.6127 | 77.2727 | 80.0000 | 96.4413 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | tech_badpromoters | het | 62.5000 | 50.0000 | 83.3333 | 14.2857 | 5 | 5 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m0_e0 | * | 22.2222 | 16.6667 | 33.3333 | 76.9231 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0458 | 99.0458 | 99.0458 | 70.6113 | 519 | 5 | 519 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6084 | 99.4152 | 92.0824 | 70.5431 | 850 | 5 | 849 | 73 | 4 | 5.4795 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.5924 | 99.6528 | 97.5543 | 73.9929 | 1435 | 5 | 1436 | 36 | 3 | 8.3333 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5239 | 99.8551 | 99.1949 | 41.9366 | 3445 | 5 | 3450 | 28 | 3 | 10.7143 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | homalt | 98.4293 | 97.4093 | 99.4709 | 94.3430 | 188 | 5 | 188 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 94.3820 | 89.3617 | 100.0000 | 56.7010 | 42 | 5 | 42 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 73.6842 | 58.3333 | 100.0000 | 69.5652 | 7 | 5 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 78.2609 | 64.2857 | 100.0000 | 97.6501 | 9 | 5 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 76.1905 | 61.5385 | 100.0000 | 98.3968 | 8 | 5 | 8 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | func_cds | * | 99.2850 | 99.9637 | 98.6154 | 24.7463 | 13782 | 5 | 13675 | 192 | 1 | 0.5208 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4679 | 99.4172 | 99.5187 | 47.0701 | 853 | 5 | 827 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 54.7264 | 68.7500 | 45.4545 | 94.3445 | 11 | 5 | 10 | 12 | 1 | 8.3333 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.4444 | 50.0000 | 40.0000 | 96.7213 | 5 | 5 | 4 | 6 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | homalt | 99.8168 | 99.8189 | 99.8146 | 77.6220 | 2756 | 5 | 2692 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 73.3373 | 87.8049 | 62.9630 | 84.4380 | 36 | 5 | 34 | 20 | 7 | 35.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 70.5882 | 80.0000 | 99.5336 | 12 | 5 | 12 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | hetalt | 86.4865 | 76.1905 | 100.0000 | 96.5116 | 16 | 5 | 9 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | hetalt | 86.4865 | 76.1905 | 100.0000 | 96.9283 | 16 | 5 | 9 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | * | 94.1935 | 93.5897 | 94.8052 | 97.6388 | 73 | 5 | 73 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | tech_badpromoters | * | 95.9637 | 93.4211 | 98.6486 | 48.6111 | 71 | 5 | 73 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | tech_badpromoters | het | 93.1507 | 87.1795 | 100.0000 | 41.5385 | 34 | 5 | 38 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 61.5385 | 44.4444 | 100.0000 | 90.3226 | 4 | 5 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 71.4286 | 66.6667 | 76.9231 | 92.0245 | 10 | 5 | 10 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 73.3333 | 68.7500 | 78.5714 | 91.8129 | 11 | 5 | 11 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 73.3333 | 68.7500 | 78.5714 | 91.8605 | 11 | 5 | 11 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | * | 81.2500 | 72.2222 | 92.8571 | 91.7160 | 13 | 5 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6834 | 98.0620 | 97.3077 | 65.4714 | 253 | 5 | 253 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.5592 | 92.9577 | 47.1429 | 58.2090 | 66 | 5 | 66 | 74 | 74 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3995 | 99.6241 | 99.1760 | 40.3752 | 1325 | 5 | 1324 | 11 | 11 | 100.0000 | |