PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48701-48750 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 81.4815 | 73.3333 | 91.6667 | 95.4887 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 96.9388 | 5 | 4 | 5 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 94.9309 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 82.1333 | 73.3333 | 93.3333 | 95.3416 | 11 | 4 | 14 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 95.6262 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 82.1333 | 73.3333 | 93.3333 | 95.9350 | 11 | 4 | 14 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 90.1961 | 85.1852 | 95.8333 | 95.4111 | 23 | 4 | 23 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 83.3333 | 75.0000 | 93.7500 | 95.8225 | 12 | 4 | 15 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | func_cds | homalt | 99.9713 | 99.9427 | 100.0000 | 20.5695 | 6975 | 4 | 6974 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9111 | 99.8224 | 100.0000 | 48.0532 | 2248 | 4 | 2228 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6375 | 99.8969 | 99.3795 | 60.3689 | 3874 | 4 | 3844 | 24 | 2 | 8.3333 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9260 | 99.9343 | 99.9177 | 51.2440 | 6084 | 4 | 6070 | 5 | 2 | 40.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.6380 | 90.2439 | 97.2973 | 85.9316 | 37 | 4 | 36 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | func_cds | homalt | 99.9621 | 99.9242 | 100.0000 | 19.3326 | 5271 | 4 | 5270 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.0149 | 94.2029 | 100.0000 | 83.5476 | 65 | 4 | 64 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8802 | 99.9362 | 99.8243 | 43.3188 | 6264 | 4 | 6250 | 11 | 3 | 27.2727 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8596 | 99.7197 | 100.0000 | 23.7942 | 1423 | 4 | 1422 | 0 | 0 | ||
| cchapple-custom | SNP | tv | func_cds | * | 99.5556 | 99.9085 | 99.2053 | 32.6708 | 4367 | 4 | 4369 | 35 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | func_cds | het | 99.2733 | 99.8495 | 98.7037 | 37.1216 | 2653 | 4 | 2665 | 35 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.7005 | 99.7006 | 99.7004 | 54.6843 | 1332 | 4 | 1331 | 4 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.5322 | 99.5322 | 99.5322 | 58.8745 | 851 | 4 | 851 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 72.7273 | 66.6667 | 80.0000 | 99.6003 | 8 | 4 | 8 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 36.2774 | 80.9524 | 23.3766 | 99.8723 | 17 | 4 | 18 | 59 | 32 | 54.2373 | |
| ciseli-custom | INDEL | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | * | 72.7273 | 85.7143 | 63.1579 | 96.7438 | 24 | 4 | 24 | 14 | 1 | 7.1429 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_siren | het | 85.1126 | 94.8718 | 77.1739 | 96.1842 | 74 | 4 | 71 | 21 | 1 | 4.7619 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 62.8141 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.7447 | 91.8367 | 100.0000 | 21.0526 | 45 | 4 | 45 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.8953 | 98.2456 | 99.5536 | 87.4228 | 224 | 4 | 223 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9596 | 98.3471 | 99.5798 | 88.1000 | 238 | 4 | 237 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.7838 | 98.3871 | 99.1837 | 88.0020 | 244 | 4 | 243 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | segdup | * | 97.5135 | 99.6374 | 95.4783 | 95.4077 | 1099 | 4 | 1098 | 52 | 1 | 1.9231 | |
| ckim-dragen | INDEL | D6_15 | HG002complexvar | homalt | 98.2293 | 99.6578 | 96.8412 | 63.9172 | 1165 | 4 | 1165 | 38 | 37 | 97.3684 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5527 | 99.6020 | 99.5035 | 66.4780 | 1001 | 4 | 1002 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 96.3636 | 92.9825 | 100.0000 | 99.5388 | 53 | 4 | 53 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.0000 | 90.4762 | 100.0000 | 99.3499 | 38 | 4 | 38 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5710 | 99.3151 | 99.8282 | 17.5637 | 580 | 4 | 581 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | * | 96.4286 | 95.2941 | 97.5904 | 93.1800 | 81 | 4 | 81 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7221 | 97.5000 | 97.9452 | 89.4888 | 156 | 4 | 143 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3532 | 98.9691 | 99.7403 | 76.7652 | 384 | 4 | 384 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 92.0863 | 22 | 4 | 22 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 77.5510 | 19 | 4 | 22 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6112 | 99.4825 | 99.7403 | 78.0188 | 769 | 4 | 768 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.1356 | 95.1220 | 82.1053 | 75.7653 | 78 | 4 | 78 | 17 | 17 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 97.6000 | 23 | 4 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7749 | 98.7768 | 98.7730 | 82.1174 | 323 | 4 | 322 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.8253 | 98.8270 | 98.8235 | 83.5590 | 337 | 4 | 336 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.8321 | 98.8338 | 98.8304 | 83.8298 | 339 | 4 | 338 | 4 | 3 | 75.0000 | |