PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48651-48700 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | tv | HG002compoundhet | homalt | 99.8672 | 99.8819 | 99.8524 | 43.2020 | 3384 | 4 | 3383 | 5 | 5 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8397 | 99.8160 | 99.8635 | 64.2706 | 2170 | 4 | 2194 | 3 | 2 | 66.6667 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.5866 | 96.7742 | 98.4127 | 90.1946 | 120 | 4 | 124 | 2 | 1 | 50.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7242 | 99.2110 | 98.2422 | 85.7580 | 503 | 4 | 503 | 9 | 2 | 22.2222 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8472 | 99.6949 | 100.0000 | 33.7893 | 1307 | 4 | 1307 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8475 | 99.4543 | 98.2480 | 73.3285 | 729 | 4 | 729 | 13 | 13 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9204 | 99.9646 | 99.8762 | 56.3829 | 11292 | 4 | 11292 | 14 | 13 | 92.8571 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.5425 | 92.0000 | 89.1304 | 86.2687 | 46 | 4 | 41 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 95.8515 | 19 | 4 | 19 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9825 | 99.0991 | 98.8662 | 76.1105 | 440 | 4 | 436 | 5 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7250 | 99.6324 | 97.8339 | 67.7720 | 1084 | 4 | 1084 | 24 | 21 | 87.5000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0407 | 99.9158 | 98.1807 | 50.4457 | 4749 | 4 | 4749 | 88 | 87 | 98.8636 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9312 | 99.9607 | 99.9018 | 54.3175 | 10174 | 4 | 10174 | 10 | 10 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 93.3136 | 98.8406 | 88.3721 | 92.6760 | 341 | 4 | 342 | 45 | 1 | 2.2222 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9900 | 9 | 4 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.8023 | 11 | 4 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.8750 | 11 | 4 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.1861 | 99.8938 | 96.5358 | 60.0431 | 3762 | 4 | 3762 | 135 | 132 | 97.7778 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2332 | 96.8504 | 97.6190 | 80.0633 | 123 | 4 | 123 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.3442 | 92.7273 | 98.1132 | 61.5942 | 51 | 4 | 52 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.5365 | 99.6524 | 64.2502 | 859 | 4 | 860 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 92.1122 | 87.8788 | 96.7742 | 62.1951 | 29 | 4 | 30 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.7654 | 99.8573 | 95.7592 | 54.7998 | 2800 | 4 | 2800 | 124 | 123 | 99.1935 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0003 | 99.8736 | 96.1960 | 56.0166 | 3161 | 4 | 3161 | 125 | 123 | 98.4000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.1861 | 99.8938 | 96.5358 | 60.0431 | 3762 | 4 | 3762 | 135 | 132 | 97.7778 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 22.5000 | 93 | 4 | 93 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 94.0741 | 96.9466 | 91.3669 | 92.3416 | 127 | 4 | 127 | 12 | 2 | 16.6667 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 94.2446 | 97.0370 | 91.6084 | 92.2744 | 131 | 4 | 131 | 12 | 2 | 16.6667 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1702 | 96.5812 | 95.7627 | 92.6980 | 113 | 4 | 113 | 5 | 1 | 20.0000 | |
| cchapple-custom | INDEL | I1_5 | HG002compoundhet | homalt | 69.4826 | 98.7842 | 53.5874 | 88.0589 | 325 | 4 | 239 | 207 | 207 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3319 | 98.5866 | 94.1781 | 59.8901 | 279 | 4 | 275 | 17 | 17 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 96.4286 | 0.0000 | 0.0000 | 108 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6333 | 99.5812 | 99.6855 | 77.3934 | 951 | 4 | 951 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5211 | 99.2995 | 97.7547 | 53.9013 | 567 | 4 | 566 | 13 | 13 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.3062 | 98.0769 | 98.5366 | 79.1242 | 204 | 4 | 202 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 40 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 40 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 91.1111 | 0.0000 | 0.0000 | 41 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4720 | 97.9798 | 98.9691 | 85.4899 | 194 | 4 | 192 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.4949 | 98.0100 | 98.9848 | 87.2244 | 197 | 4 | 195 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5173 | 98.0392 | 99.0000 | 87.3658 | 200 | 4 | 198 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.3333 | 96.7213 | 100.0000 | 68.6833 | 118 | 4 | 176 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.6667 | 88.5714 | 97.1591 | 68.0581 | 31 | 4 | 171 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5192 | 99.0431 | 100.0000 | 49.7048 | 414 | 4 | 426 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 82.2134 | 76.4706 | 88.8889 | 93.3824 | 13 | 4 | 16 | 2 | 1 | 50.0000 | |