PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47501-47550 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I16_PLUS | map_l150_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 77.7778 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.9798 | 99.3852 | 96.6135 | 72.1575 | 485 | 3 | 485 | 17 | 16 | 94.1176 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.1826 | 99.5074 | 94.9640 | 83.8841 | 606 | 3 | 528 | 28 | 21 | 75.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.2069 | 89.2857 | 83.3333 | 96.8051 | 25 | 3 | 25 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.6603 | 93.4783 | 80.7692 | 95.8031 | 43 | 3 | 42 | 10 | 4 | 40.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.1148 | 93.7500 | 79.6296 | 96.2211 | 45 | 3 | 43 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.8949 | 94.1176 | 80.7018 | 96.1039 | 48 | 3 | 46 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | het | 91.7899 | 96.1538 | 87.8049 | 95.9883 | 75 | 3 | 72 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8372 | 98.8372 | 98.8372 | 63.4043 | 255 | 3 | 255 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2603 | 95.9459 | 98.6111 | 81.3953 | 71 | 3 | 71 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.0000 | 99.2084 | 89.3112 | 60.6909 | 376 | 3 | 376 | 45 | 44 | 97.7778 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.6443 | 96.0000 | 97.2973 | 64.7619 | 72 | 3 | 72 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.8421 | 93.8776 | 100.0000 | 26.9841 | 46 | 3 | 46 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.4932 | 99.4932 | 99.4932 | 83.1098 | 589 | 3 | 589 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5090 | 99.5090 | 99.5090 | 83.7888 | 608 | 3 | 608 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5161 | 99.5161 | 99.5161 | 83.8500 | 617 | 3 | 617 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 96.0000 | 98.2456 | 93.8547 | 95.4775 | 168 | 3 | 168 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 96.2766 | 98.3696 | 94.2708 | 95.7248 | 181 | 3 | 181 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 96.2963 | 98.3784 | 94.3005 | 95.8016 | 182 | 3 | 182 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.6669 | 99.5017 | 88.4786 | 52.4912 | 599 | 3 | 599 | 78 | 77 | 98.7179 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.1994 | 99.9203 | 96.5367 | 59.9507 | 3763 | 3 | 3763 | 135 | 133 | 98.5185 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 57.6471 | 36 | 3 | 36 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6522 | 99.4792 | 99.8258 | 69.0232 | 573 | 3 | 573 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 61.9718 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.7973 | 90.9091 | 96.8750 | 61.9048 | 30 | 3 | 31 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.7350 | 99.3135 | 86.9739 | 48.2902 | 434 | 3 | 434 | 65 | 65 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.7832 | 99.8930 | 95.7607 | 54.7214 | 2801 | 3 | 2801 | 124 | 124 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0161 | 99.9052 | 96.1971 | 55.9029 | 3162 | 3 | 3162 | 125 | 124 | 99.2000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.1994 | 99.9203 | 96.5367 | 59.9507 | 3763 | 3 | 3763 | 135 | 133 | 98.5185 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 96.1538 | 97.0874 | 95.2381 | 90.1961 | 100 | 3 | 100 | 5 | 1 | 20.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 95.3488 | 97.6190 | 93.1818 | 89.9772 | 123 | 3 | 123 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 96.4539 | 95.7746 | 97.1429 | 92.7611 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 96.4539 | 95.7746 | 97.1429 | 92.9078 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0796 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.4961 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 90.9449 | 23 | 3 | 23 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 75.0000 | 20 | 3 | 23 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 90.1961 | 88.4615 | 92.0000 | 95.7627 | 23 | 3 | 23 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 86.7925 | 88.4615 | 85.1852 | 96.0641 | 23 | 3 | 23 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 86.7925 | 88.4615 | 85.1852 | 96.0813 | 23 | 3 | 23 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6764 | 99.6119 | 99.7409 | 78.4116 | 770 | 3 | 770 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5738 | 99.3617 | 99.7868 | 68.6707 | 467 | 3 | 468 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.1765 | 109 | 3 | 109 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.1132 | 96.2963 | 100.0000 | 78.9189 | 78 | 3 | 78 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4338 | 99.1525 | 99.7167 | 70.1606 | 351 | 3 | 352 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.4138 | 152 | 3 | 153 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.4384 | 32 | 3 | 25 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 85.7143 | 80.0000 | 92.3077 | 95.6667 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.1622 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.8395 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |