PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46951-47000 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0381 | 99.3603 | 98.7179 | 86.0756 | 466 | 3 | 462 | 6 | 5 | 83.3333 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5189 | 99.8302 | 99.2095 | 64.3231 | 1764 | 3 | 1757 | 14 | 7 | 50.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7709 | 99.7712 | 99.7706 | 38.2436 | 1308 | 3 | 1305 | 3 | 2 | 66.6667 | |
| qzeng-custom | SNP | tv | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 98.3740 | 2 | 3 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 98.3871 | 2 | 3 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | tv | tech_badpromoters | * | 93.8212 | 95.8333 | 91.8919 | 51.6340 | 69 | 3 | 68 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9381 | 99.9734 | 99.9027 | 56.1708 | 11293 | 3 | 11293 | 11 | 11 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 88.7273 | 30 | 3 | 31 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.5943 | 18 | 3 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.3574 | 18 | 3 | 18 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 87.6827 | 82.3529 | 93.7500 | 99.9627 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 90.1855 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.8101 | 18 | 3 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.3768 | 18 | 3 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | * | 93.7500 | 96.1538 | 91.4634 | 99.7895 | 75 | 3 | 75 | 7 | 1 | 14.2857 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.5066 | 106 | 3 | 106 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 95.1136 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 95.2243 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | * | 97.3333 | 96.0526 | 98.6486 | 91.8051 | 73 | 3 | 73 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.6667 | 62.5000 | 3.5211 | 41.5638 | 5 | 3 | 5 | 137 | 82 | 59.8540 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.5075 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.4000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.2857 | 6 | 3 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 62.5000 | 71.4286 | 74.5455 | 5 | 3 | 10 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | * | 85.0785 | 89.2857 | 81.2500 | 90.6158 | 25 | 3 | 26 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 85.7143 | 80.0000 | 92.3077 | 90.1515 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.2778 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.3448 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | het | 88.4651 | 96.1538 | 81.9149 | 90.0529 | 75 | 3 | 77 | 17 | 8 | 47.0588 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.3051 | 97.9730 | 98.6395 | 86.5876 | 145 | 3 | 145 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 86.9565 | 76.9231 | 100.0000 | 96.0784 | 10 | 3 | 10 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.9986 | 99.1404 | 98.8571 | 84.4858 | 346 | 3 | 346 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.9044 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0398 | 99.1758 | 98.9041 | 85.4408 | 361 | 3 | 361 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 96.0526 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0604 | 99.1935 | 98.9276 | 85.4807 | 369 | 3 | 369 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 90.1425 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.0949 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9648 | 98.7603 | 99.1701 | 87.9077 | 239 | 3 | 239 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.7903 | 98.7903 | 98.7903 | 87.8491 | 245 | 3 | 245 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m0_e0 | * | 93.4783 | 93.4783 | 93.4783 | 97.1622 | 43 | 3 | 43 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4047 | 99.1254 | 97.6945 | 56.8408 | 340 | 3 | 339 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | het | 93.2926 | 97.6190 | 89.3333 | 87.2557 | 123 | 3 | 134 | 16 | 8 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.2406 | 95.5224 | 96.9697 | 85.6522 | 64 | 3 | 64 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m0_e0 | * | 93.7471 | 93.6170 | 93.8776 | 92.2713 | 44 | 3 | 46 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 93.0501 | 95.7746 | 90.4762 | 89.6552 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 93.0501 | 95.7746 | 90.4762 | 89.8673 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | * | 92.2524 | 90.6250 | 93.9394 | 93.7262 | 29 | 3 | 31 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.6429 | 6 | 3 | 3 | 0 | 0 | ||