PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46851-46900 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 89.0909 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 89.2857 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | * | 76.1905 | 72.7273 | 80.0000 | 88.8889 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | * | 76.1905 | 72.7273 | 80.0000 | 90.4762 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | * | 76.1905 | 72.7273 | 80.0000 | 90.4762 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002compoundhet | homalt | 80.1968 | 99.0881 | 67.3554 | 78.4506 | 326 | 3 | 326 | 158 | 149 | 94.3038 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.6217 | 88.0000 | 91.3043 | 42.5000 | 22 | 3 | 21 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 20.0000 | 20 | 3 | 20 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1698 | 97.1698 | 97.1698 | 95.7819 | 103 | 3 | 103 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | * | 97.3451 | 97.3451 | 97.3451 | 96.1837 | 110 | 3 | 110 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | * | 97.3684 | 97.3684 | 97.3684 | 96.2818 | 111 | 3 | 111 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.6667 | 91.6667 | 91.6667 | 72.7273 | 33 | 3 | 33 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 68.8525 | 87.5000 | 56.7568 | 72.9927 | 21 | 3 | 21 | 16 | 15 | 93.7500 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | * | 93.7500 | 90.9091 | 96.7742 | 90.4321 | 30 | 3 | 30 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m1_e0 | het | 94.9153 | 94.9153 | 94.9153 | 85.9189 | 56 | 3 | 56 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m1_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 85.5072 | 30 | 3 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0820 | 95.0820 | 95.0820 | 86.6812 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 87.0130 | 30 | 3 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0820 | 95.0820 | 95.0820 | 86.8817 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | homalt | 95.2381 | 90.9091 | 100.0000 | 87.2881 | 30 | 3 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m1_e0 | het | 93.1034 | 90.0000 | 96.4286 | 89.8917 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e0 | het | 93.1034 | 90.0000 | 96.4286 | 90.8497 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e1 | het | 93.1034 | 90.0000 | 96.4286 | 91.0256 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m1_e0 | * | 91.6667 | 88.0000 | 95.6522 | 93.8172 | 22 | 3 | 22 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m1_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.3966 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | * | 91.6667 | 88.0000 | 95.6522 | 94.5755 | 22 | 3 | 22 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.8413 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | * | 92.3077 | 88.8889 | 96.0000 | 94.3439 | 24 | 3 | 24 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | het | 86.6667 | 81.2500 | 92.8571 | 94.6360 | 13 | 3 | 13 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | segdup | homalt | 96.7033 | 93.6170 | 100.0000 | 91.7137 | 44 | 3 | 44 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.7143 | 80.0000 | 92.3077 | 92.6966 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6503 | 99.6503 | 99.6503 | 49.2608 | 855 | 3 | 855 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 81.2500 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.4156 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.3763 | 99.3763 | 99.3763 | 54.9625 | 478 | 3 | 478 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4917 | 99.6183 | 99.3655 | 63.7701 | 783 | 3 | 783 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7712 | 99.7712 | 99.7712 | 36.2974 | 1308 | 3 | 1308 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | homalt | 98.9583 | 98.4456 | 99.4764 | 91.6630 | 190 | 3 | 190 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 49.0231 | 85.7143 | 34.3284 | 99.8804 | 18 | 3 | 23 | 44 | 2 | 4.5455 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 89.9387 | 93.6170 | 86.5385 | 51.8519 | 44 | 3 | 45 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l125_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 97.6190 | 8 | 3 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m0_e0 | hetalt | 66.6667 | 100.0000 | 6 | 3 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | tech_badpromoters | * | 96.0263 | 96.0526 | 96.0000 | 50.9804 | 73 | 3 | 72 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.1085 | 98.8889 | 89.7690 | 62.4535 | 267 | 3 | 272 | 31 | 1 | 3.2258 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 9 | 3 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 35.7190 | 84.2105 | 22.6667 | 92.9112 | 16 | 3 | 17 | 58 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 51.5647 | 89.2857 | 36.2500 | 95.6873 | 25 | 3 | 29 | 51 | 0 | 0.0000 | |