PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46251-46300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 81.8182 | 0 | 3 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 88.2353 | 1 | 3 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | segdup | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.7368 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7696 | 99.0826 | 98.4586 | 84.5167 | 324 | 3 | 511 | 8 | 7 | 87.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6471 | 99.1202 | 98.1785 | 85.0123 | 338 | 3 | 539 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.6596 | 99.1254 | 98.1982 | 85.1326 | 340 | 3 | 545 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1563 | 97.1698 | 97.1429 | 94.7130 | 103 | 3 | 170 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | * | 97.1095 | 97.3451 | 96.8750 | 94.8855 | 110 | 3 | 186 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | * | 97.1292 | 97.3684 | 96.8912 | 95.0078 | 111 | 3 | 187 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | het | 74.7253 | 66.6667 | 85.0000 | 84.1270 | 6 | 3 | 17 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 73.5849 | 5 | 3 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.4720 | 80.0000 | 89.4737 | 80.7107 | 12 | 3 | 34 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 74.1379 | 5 | 3 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | homalt | 84.8138 | 80.0000 | 90.2439 | 81.1060 | 12 | 3 | 37 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 74.4745 | 97.6378 | 60.1942 | 45.5026 | 124 | 3 | 124 | 82 | 82 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.9231 | 62.5000 | 100.0000 | 50.0000 | 5 | 3 | 20 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m1_e0 | het | 88.0000 | 78.5714 | 100.0000 | 86.4198 | 11 | 3 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | het | 89.6552 | 81.2500 | 100.0000 | 85.5556 | 13 | 3 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | het | 89.6552 | 81.2500 | 100.0000 | 85.7143 | 13 | 3 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | segdup | hetalt | 66.6667 | 100.0000 | 6 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.9394 | 11 | 3 | 8 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.2218 | 98.8372 | 99.6094 | 86.6736 | 255 | 3 | 255 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.3684 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.6048 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 97.0930 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | * | 94.5055 | 93.4783 | 95.5556 | 97.5179 | 43 | 3 | 43 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | het | 92.3077 | 90.9091 | 93.7500 | 97.0936 | 30 | 3 | 30 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | segdup | hetalt | 94.1742 | 94.2308 | 94.1176 | 97.6902 | 49 | 3 | 16 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | func_cds | het | 89.8273 | 89.6552 | 90.0000 | 47.3684 | 26 | 3 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 60.0000 | 50.0000 | 75.0000 | 97.9899 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 99.6219 | 6 | 3 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1004 | 99.3228 | 98.8789 | 34.2183 | 440 | 3 | 441 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8254 | 95.3125 | 98.3871 | 89.5798 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.8387 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | het | 93.2102 | 89.6552 | 97.0588 | 89.8204 | 26 | 3 | 33 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 92.1053 | 17 | 3 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | het | 95.7563 | 93.4783 | 98.1481 | 89.2000 | 43 | 3 | 53 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | het | 95.8451 | 93.6170 | 98.1818 | 89.2578 | 44 | 3 | 54 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 87.5000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 90.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 57.1429 | 40.0000 | 100.0000 | 90.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||