PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46201-46250 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.2251 | 99.7837 | 94.7945 | 71.8473 | 1384 | 3 | 1384 | 76 | 5 | 6.5790 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2813 | 99.8597 | 98.7097 | 43.7241 | 2135 | 3 | 2142 | 28 | 3 | 10.7143 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 40.0000 | 66.6667 | 99.7432 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 77.7778 | 70.0000 | 87.5000 | 99.7959 | 7 | 3 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.9117 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | HG002compoundhet | homalt | 52.6316 | 62.5000 | 45.4545 | 79.2453 | 5 | 3 | 5 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 99.3902 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 99.3590 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.7143 | 75.0000 | 100.0000 | 64.0000 | 9 | 3 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 86.9565 | 76.9231 | 100.0000 | 33.3333 | 10 | 3 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.1538 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 98.4314 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 98.0952 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.8276 | 6 | 3 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 76.9231 | 62.5000 | 100.0000 | 99.7532 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 82.3529 | 70.0000 | 100.0000 | 99.7165 | 7 | 3 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | tech_badpromoters | het | 76.9231 | 62.5000 | 100.0000 | 76.1905 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 40.0000 | 6 | 3 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | het | 94.5455 | 89.6552 | 100.0000 | 62.8571 | 26 | 3 | 26 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | decoy | het | 28.5714 | 25.0000 | 33.3333 | 98.0892 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | func_cds | homalt | 40.0000 | 25.0000 | 100.0000 | 66.6667 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 98.3333 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 98.3051 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.4737 | 85.0000 | 94.4444 | 87.2340 | 17 | 3 | 17 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.4737 | 85.0000 | 94.4444 | 88.0000 | 17 | 3 | 17 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | het | 89.6047 | 85.0000 | 94.7368 | 87.5000 | 17 | 3 | 18 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.4444 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m1_e0 | * | 83.2000 | 80.0000 | 86.6667 | 91.0180 | 12 | 3 | 13 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | * | 85.1927 | 82.3529 | 88.2353 | 90.6593 | 14 | 3 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.4742 | 76.9231 | 88.8889 | 88.8889 | 10 | 3 | 8 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.3470 | 97.9730 | 96.7290 | 90.0047 | 145 | 3 | 207 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 96.8641 | 4 | 3 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 96.9789 | 4 | 3 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 96.7552 | 5 | 3 | 11 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | func_cds | het | 89.6552 | 89.6552 | 89.6552 | 38.2979 | 26 | 3 | 26 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 58.3333 | 9 | 3 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 53.3333 | 50.0000 | 57.1429 | 99.4104 | 3 | 3 | 12 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | het | 92.9271 | 95.7746 | 90.2439 | 86.6667 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | het | 92.9271 | 95.7746 | 90.2439 | 86.9634 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | * | 90.3114 | 90.6250 | 90.0000 | 92.9577 | 29 | 3 | 36 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 91.6667 | 2 | 3 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | * | 89.3697 | 86.3636 | 92.5926 | 95.3287 | 19 | 3 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | * | 89.3697 | 86.3636 | 92.5926 | 95.4082 | 19 | 3 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 90.0000 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 75.0000 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 78.2609 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 40.0000 | 80.0000 | 79.1667 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |