PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45751-45800 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 44.4444 | 66.6667 | 33.3333 | 73.9130 | 4 | 2 | 4 | 8 | 3 | 37.5000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 75.0000 | 25.0000 | 86.6667 | 6 | 2 | 8 | 24 | 2 | 8.3333 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 82.6087 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.3333 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.8710 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | tech_badpromoters | homalt | 95.0609 | 95.1220 | 95.0000 | 49.3671 | 39 | 2 | 38 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | func_cds | homalt | 99.1797 | 99.8826 | 98.4866 | 26.8313 | 1702 | 2 | 1692 | 26 | 9 | 34.6154 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 25.1497 | 77.7778 | 15.0000 | 88.4393 | 7 | 2 | 9 | 51 | 2 | 3.9216 | |
| ciseli-custom | SNP | tv | map_l150_m0_e0 | hetalt | 33.3333 | 33.3333 | 33.3333 | 90.9091 | 1 | 2 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.7407 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.9091 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | tech_badpromoters | * | 84.1610 | 97.2222 | 74.1935 | 52.7919 | 70 | 2 | 69 | 24 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | func_cds | * | 98.4444 | 99.5506 | 97.3626 | 49.5006 | 443 | 2 | 443 | 12 | 1 | 8.3333 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 93.3333 | 87.5000 | 100.0000 | 99.8894 | 14 | 2 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 95.2128 | 9 | 2 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l250_m0_e0 | * | 92.1212 | 97.4359 | 87.3563 | 97.7177 | 76 | 2 | 76 | 11 | 1 | 9.0909 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8142 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1735 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.2143 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | HG002complexvar | homalt | 95.9866 | 99.3080 | 92.8803 | 75.5924 | 287 | 2 | 287 | 22 | 20 | 90.9091 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4934 | 99.5943 | 99.3927 | 58.8676 | 491 | 2 | 491 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2565 | 99.2593 | 99.2537 | 65.0131 | 268 | 2 | 266 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.9475 | 99.4987 | 94.5238 | 65.8537 | 397 | 2 | 397 | 23 | 23 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 96.6667 | 0.0000 | 0.0000 | 58 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2452 | 99.2509 | 99.2395 | 60.2118 | 265 | 2 | 261 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 91.3043 | 0.0000 | 0.0000 | 21 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 97.7444 | 97.0149 | 98.4848 | 88.2562 | 65 | 2 | 65 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 91.4851 | 91.6667 | 91.3043 | 97.8281 | 22 | 2 | 21 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 86.1878 | 86.6667 | 85.7143 | 98.1912 | 13 | 2 | 12 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | segdup | hetalt | 0.0000 | 95.8333 | 0.0000 | 0.0000 | 46 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.1825 | 99.6937 | 96.7164 | 71.0458 | 651 | 2 | 648 | 22 | 21 | 95.4545 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 97.6471 | 0.0000 | 0.0000 | 83 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 96.1538 | 0.0000 | 0.0000 | 50 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 95.4545 | 0.0000 | 0.0000 | 42 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 47.7208 | 120 | 2 | 367 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 96.6825 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 57.1429 | 50.0000 | 66.6667 | 98.0645 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 97.7099 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 98.4615 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |