PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45551-45600 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.2143 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6761 | 99.8558 | 99.4971 | 65.7565 | 1385 | 2 | 1385 | 7 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3855 | 95.2381 | 97.5610 | 89.5939 | 40 | 2 | 40 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.7746 | 94.4444 | 97.1429 | 88.4488 | 34 | 2 | 34 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7952 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 53.2895 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | func_cds | hetalt | 75.0000 | 60.0000 | 100.0000 | 55.5556 | 3 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 88.8889 | 80.0000 | 100.0000 | 99.5595 | 8 | 2 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.4949 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.6667 | 4 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9011 | 4 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9529 | 4 | 2 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.3820 | 95.4545 | 93.3333 | 96.9512 | 42 | 2 | 42 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 87.5000 | 77.7778 | 100.0000 | 95.5696 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.3396 | 98.0392 | 90.9091 | 62.3288 | 100 | 2 | 100 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 91.0714 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | het | 74.6228 | 89.4737 | 64.0000 | 97.0449 | 17 | 2 | 16 | 9 | 1 | 11.1111 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m0_e0 | * | 76.9231 | 83.3333 | 71.4286 | 97.7671 | 10 | 2 | 10 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | * | 86.2069 | 92.5926 | 80.6452 | 97.3436 | 25 | 2 | 25 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | * | 83.3333 | 92.5926 | 75.7576 | 97.6035 | 25 | 2 | 25 | 8 | 1 | 12.5000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.7368 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l150_m1_e0 | * | 81.2500 | 86.6667 | 76.4706 | 97.8399 | 13 | 2 | 13 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e0 | * | 81.0811 | 88.2353 | 75.0000 | 97.9079 | 15 | 2 | 15 | 5 | 1 | 20.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m1_e0 | * | 44.4444 | 50.0000 | 40.0000 | 98.5549 | 2 | 2 | 2 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e0 | * | 54.5455 | 60.0000 | 50.0000 | 98.5112 | 3 | 2 | 3 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | * | 54.5455 | 60.0000 | 50.0000 | 98.5294 | 3 | 2 | 3 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6327 | 99.6337 | 99.6317 | 78.3060 | 544 | 2 | 541 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7177 | 99.8119 | 99.6237 | 81.1758 | 1061 | 2 | 1059 | 4 | 2 | 50.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.9823 | 98.9848 | 97.0000 | 60.1594 | 195 | 2 | 194 | 6 | 6 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9248 | 99.8496 | 100.0000 | 41.9185 | 1328 | 2 | 1326 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.2249 | 97.6471 | 98.8095 | 90.0238 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.3451 | 96.4912 | 98.2143 | 94.0426 | 55 | 2 | 55 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4790 | 96.6667 | 98.3051 | 94.5065 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4790 | 96.6667 | 98.3051 | 94.6266 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | segdup | het | 96.2915 | 99.7110 | 93.0988 | 95.7597 | 690 | 2 | 688 | 51 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.3039 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 87.6552 | 99.6678 | 78.2269 | 51.0842 | 600 | 2 | 600 | 167 | 166 | 99.4012 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5305 | 99.7647 | 99.2974 | 52.1032 | 848 | 2 | 848 | 6 | 6 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.6170 | 91.6667 | 95.6522 | 75.0000 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | het | 95.0820 | 96.6667 | 93.5484 | 91.2181 | 58 | 2 | 58 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 79.7619 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 92.4138 | 22 | 2 | 22 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | het | 97.2549 | 98.4127 | 96.1240 | 90.5564 | 124 | 2 | 124 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 82.2917 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.0326 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | het | 96.5035 | 97.1831 | 95.8333 | 92.7565 | 69 | 2 | 69 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 84.5455 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | homalt | 95.7746 | 94.4444 | 97.1429 | 91.1392 | 34 | 2 | 34 | 1 | 1 | 100.0000 | |