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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 906 907 908 909 910 911 912 913 914 ... 1720 1721 » 45451-45500 / 86044 show all
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	het	94.4444	94.4444	94.4444	89.0578	34	2	34	2	0	0.0000
ckim-dragen	SNP	tv	map_l250_m0_e0	homalt	97.6982	98.9637	96.4646	90.7993	191	2	191	7	5	71.4286
ckim-dragen	SNP	tv	tech_badpromoters	het	96.8750	93.9394	100.0000	35.4167	31	2	31	0	0
ckim-gatk	INDEL	*	HG002compoundhet	homalt	61.0169	99.7085	43.9589	84.7301	684	2	684	872	869	99.6560
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7247	1884	2	1884	7	5	71.4286
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8597	99.9065	99.8129	76.8740	2136	2	2134	4	1	25.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9481	6070	2	6070	25	24	96.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.6908	99.5935	97.8044	62.6398	490	2	490	11	9	81.8182
ckim-gatk	INDEL	*	map_l125_m0_e0	homalt	98.7741	99.2958	98.2578	88.6874	282	2	282	5	4	80.0000
ckim-gatk	INDEL	*	map_l250_m0_e0	het	80.3150	96.2264	68.9189	98.4901	51	2	51	23	1	4.3478
ckim-gatk	INDEL	*	map_l250_m1_e0	hetalt	80.0000	66.6667	100.0000	98.1308	4	2	4	0	0
ckim-gatk	INDEL	*	map_l250_m1_e0	homalt	98.1651	98.1651	98.1651	95.2464	107	2	107	2	2	100.0000
ckim-gatk	INDEL	*	map_l250_m2_e0	hetalt	80.0000	66.6667	100.0000	98.4496	4	2	4	0	0
ckim-gatk	INDEL	*	map_l250_m2_e0	homalt	98.2609	98.2609	98.2609	95.6538	113	2	113	2	2	100.0000
ckim-gatk	INDEL	*	map_l250_m2_e1	hetalt	80.0000	66.6667	100.0000	98.4791	4	2	4	0	0
ckim-gatk	INDEL	*	map_l250_m2_e1	homalt	98.2759	98.2759	98.2759	95.7196	114	2	114	2	2	100.0000
ckim-gatk	INDEL	*	segdup	homalt	99.3776	99.7917	98.9669	93.6950	958	2	958	10	9	90.0000
ckim-gatk	INDEL	D16_PLUS	HG002complexvar	homalt	98.7952	99.3080	98.2877	76.3371	287	2	287	5	4	80.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.8852	99.5902	96.2376	72.0686	486	2	486	19	18	94.7368
ckim-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.5939	910	2	910	11	8	72.7273
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5943	99.5943	99.5943	58.4317	491	2	491	2	0	0.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.6165	99.2278	94.1392	60.2041	257	2	257	16	15	93.7500
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.4848	99.7211	97.2789	61.7387	715	2	715	20	19	95.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.7712	99.6205	94.0803	83.0466	525	2	445	28	26	92.8571
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.8792	99.4987	98.2673	65.6463	397	2	397	7	5	71.4286
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	*	97.0588	97.0588	97.0588	96.9133	66	2	66	2	0	0.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	95.4545	95.4545	95.4545	96.8594	42	2	42	2	0	0.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4888	99.5012	99.4764	82.1911	399	2	380	2	1	50.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	77.4194	75.0000	80.0000	92.1875	6	2	4	1	1	100.0000
ckim-gatk	INDEL	D16_PLUS	map_l100_m0_e0	*	88.1356	92.8571	83.8710	97.1001	26	2	26	5	0	0.0000
ckim-gatk	INDEL	D16_PLUS	map_l100_m1_e0	het	87.7958	95.6522	81.1321	96.3322	44	2	43	10	4	40.0000
ckim-gatk	INDEL	D16_PLUS	map_l100_m2_e0	het	88.0766	95.8333	81.4815	96.7606	46	2	44	10	4	40.0000
ckim-gatk	INDEL	D16_PLUS	map_l100_m2_e1	het	88.7476	96.0784	82.4561	96.6569	49	2	47	10	4	40.0000
ckim-gatk	INDEL	D16_PLUS	map_siren	het	91.8695	97.4359	86.9048	96.2700	76	2	73	11	2	18.1818
ckim-gatk	INDEL	D16_PLUS	segdup	*	91.0569	96.5517	86.1538	96.9253	56	2	56	9	2	22.2222
ckim-gatk	INDEL	D16_PLUS	segdup	hetalt	87.5000	77.7778	100.0000	92.8000	7	2	9	0	0
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	78.0419	544	2	544	1	1	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8119	99.8119	99.8119	81.3574	1061	2	1061	2	1	50.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	95.8904	94.5946	97.2222	86.4151	35	2	35	1	1	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	75.4098	97.1831	61.6071	52.7426	69	2	69	43	43	100.0000
ckim-gatk	INDEL	D1_5	map_l100_m0_e0	homalt	99.0329	99.2248	98.8417	84.1880	256	2	256	3	2	66.6667
ckim-gatk	INDEL	D1_5	map_l150_m0_e0	het	91.5697	99.0099	85.1695	94.5522	200	2	201	35	0	0.0000
ckim-gatk	INDEL	D1_5	map_l250_m1_e0	hetalt	50.0000	33.3333	100.0000	99.2647	1	2	1	0	0
ckim-gatk	INDEL	D1_5	map_l250_m2_e0	hetalt	50.0000	33.3333	100.0000	99.3902	1	2	1	0	0
ckim-gatk	INDEL	D1_5	map_l250_m2_e1	hetalt	50.0000	33.3333	100.0000	99.4048	1	2	1	0	0
ckim-gatk	INDEL	D1_5	segdup	hetalt	98.0392	96.1538	100.0000	95.6336	50	2	51	0	0
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.3615	99.8976	96.8719	41.6063	1951	2	1951	63	62	98.4127
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.6842	98.7578	72.6027	36.7052	159	2	159	60	60	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2481	99.2481	99.2481	82.9814	264	2	264	2	1	50.0000

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