PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45351-45400 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.4253 | 98.8571 | 100.0000 | 66.6031 | 173 | 2 | 175 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 91.4286 | 88.8889 | 94.1176 | 94.5860 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 88.8889 | 88.8889 | 88.8889 | 95.1482 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 88.8889 | 88.8889 | 88.8889 | 95.1613 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.6960 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 96.8872 | 13 | 2 | 13 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 83.8710 | 86.6667 | 81.2500 | 96.8932 | 13 | 2 | 13 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 81.8182 | 81.8182 | 81.8182 | 97.0899 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 81.8182 | 81.8182 | 81.8182 | 97.3494 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 81.8182 | 81.8182 | 81.8182 | 97.3621 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | het | 93.0693 | 95.9184 | 90.3846 | 91.9255 | 47 | 2 | 47 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7906 | 99.7906 | 99.7906 | 80.3781 | 953 | 2 | 953 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.8729 | 92.5926 | 75.0000 | 96.7742 | 25 | 2 | 3 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6795 | 99.3610 | 100.0000 | 35.0731 | 311 | 2 | 311 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 88.5246 | 42 | 2 | 42 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 89.4207 | 42 | 2 | 42 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.3827 | 43 | 2 | 43 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 93.6170 | 91.6667 | 95.6522 | 98.1673 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.5507 | 13 | 2 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_siren | homalt | 99.6711 | 99.8350 | 99.5078 | 78.3135 | 1210 | 2 | 1213 | 6 | 4 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.0338 | 46 | 2 | 47 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.7984 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4318 | 98.8701 | 100.0000 | 74.1124 | 175 | 2 | 175 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6744 | 95.4545 | 100.0000 | 75.4386 | 42 | 2 | 42 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7602 | 99.5215 | 100.0000 | 47.2081 | 416 | 2 | 416 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 61.2378 | 120 | 2 | 119 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 90.9091 | 88.2353 | 93.7500 | 93.5223 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.6514 | 20 | 2 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.6066 | 20 | 2 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.1270 | 20 | 2 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 82.3529 | 77.7778 | 87.5000 | 95.8115 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.1660 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.4248 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.8333 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.3226 | 87.5000 | 93.3333 | 95.6647 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 97.9381 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.8593 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.9532 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.3009 | 40 | 2 | 40 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.1538 | 92.5926 | 100.0000 | 97.7558 | 25 | 2 | 25 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 69.1406 | 79 | 2 | 79 | 0 | 0 | ||
| astatham-gatk | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 39.9586 | 580 | 2 | 580 | 0 | 0 | ||
| astatham-gatk | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 35.3312 | 205 | 2 | 205 | 0 | 0 | ||
| astatham-gatk | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 21.9215 | 577 | 2 | 577 | 0 | 0 | ||
| astatham-gatk | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 45.0980 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | tech_badpromoters | het | 97.6744 | 95.4545 | 100.0000 | 48.1481 | 42 | 2 | 42 | 0 | 0 | ||
| astatham-gatk | SNP | tv | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8726 | 99.7455 | 100.0000 | 62.0155 | 784 | 2 | 784 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8092 | 99.6190 | 100.0000 | 67.4953 | 523 | 2 | 523 | 0 | 0 | ||